View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8755_low_4 (Length: 550)

Name: NF8755_low_4
Description: NF8755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8755_low_4
NF8755_low_4
[»] chr8 (3 HSPs)
chr8 (1-537)||(4618570-4619106)
chr8 (4-109)||(4296749-4296854)
chr8 (4-109)||(4788326-4788431)
[»] chr1 (13 HSPs)
chr1 (3-496)||(45984558-45985043)
chr1 (7-199)||(38138729-38138921)
chr1 (3-427)||(43043990-43044415)
chr1 (3-427)||(43067576-43068000)
chr1 (3-141)||(7891817-7891955)
chr1 (3-427)||(43082835-43083259)
chr1 (4-115)||(50911744-50911855)
chr1 (3-139)||(3300013-3300149)
chr1 (3-139)||(43077453-43077589)
chr1 (273-427)||(7892138-7892295)
chr1 (12-133)||(40035570-40035691)
chr1 (281-392)||(3299761-3299875)
chr1 (292-419)||(38139003-38139132)
[»] chr4 (2 HSPs)
chr4 (3-142)||(4230741-4230880)
chr4 (7-115)||(19965396-19965504)
[»] chr5 (1 HSPs)
chr5 (1-153)||(16348412-16348564)
[»] chr6 (2 HSPs)
chr6 (6-140)||(7530127-7530261)
chr6 (6-139)||(7520590-7520723)
[»] chr2 (4 HSPs)
chr2 (5-115)||(33860137-33860247)
chr2 (54-133)||(16231466-16231545)
chr2 (66-115)||(34690143-34690192)
chr2 (66-115)||(34712555-34712604)


Alignment Details
Target: chr8 (Bit Score: 525; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Complemental strand, 4619106 - 4618570
Alignment:
Q  1 gcattattaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4619106 gcattattaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaacagt 4619007  T
Q  101 ggctgttggagtcattaaggctgtgaagaagaaggatcctggtgcaggaggtagtatcactaaatcggcattgcagaagtgaattgtgcaggatgatcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4619006 ggctgttggagtcattaaggctgtgaagaagaaggatcctggtgcaggaggtagtatcactaaatcggcattgcagaagtgaattgtgcaggatgatcta 4618907  T
Q  201 aatttaaatagaaagtgcatcgtcgttattacaataataattagtctttggtcctgagtatttctataccttgtctagtaaacttgttttgcaggttaag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4618906 aatttaaatagaaagtgcatcgtcgttattacaataataattagtctttggtcctgagtatttctataccttgtctagtaaacttgttttgcaggttaag 4618807  T
Q  301 tgtcaagtctgcactgtcatatcagtttttgttcctagaactcggttctagattgactgtggcagggctatttctttttcgttttatgctttaattattg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4618806 tgtcaagtctgcactgtcatatcagtttttgttcctagaactcggttctagattgactgtggcagggctatttctttttcgttttatgctttaattattg 4618707  T
Q  401 tgtctaatgtgaacacttggattttgttgacatcaagtttctgaacatgctgagcttgattttgttttgaatatcaattctttatttgtgtatttacttc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  4618706 tgtctaatgtgaacacttggattttgttgacatcaagtttctgaacatgctgagcctgattttgttttgaatatcaactctttatttgtgtatttacttc 4618607  T
Q  501 ttggtgtaatgttttatgttcttgccgggtgtctctg 537  Q
    |||||||||||||||||||||||||||||||||||||    
T  4618606 ttggtgtaatgttttatgttcttgccgggtgtctctg 4618570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 4296854 - 4296749
Alignment:
Q  4 ttattaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggc 103  Q
    |||||||||||||||||||| || | |||||||||||| |||| |||   | |||| ||||| ||||||||| ||||  |||| | | || || ||||||    
T  4296854 ttattaagatgattcccaccgagtctatggtggtagagcctttctctctatctcctccactcagccgttttgttgtccaagacttgcatcaaattgtggc 4296755  T
Q  104 tgttgg 109  Q
    ||||||    
T  4296754 tgttgg 4296749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 4788326 - 4788431
Alignment:
Q  4 ttattaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggc 103  Q
    ||||| ||||| ||||||||||||| |||||||||||| |||| | |   |||||| |||| |||| ||||| |||| || || | | || |||||||||    
T  4788326 ttattgagatggttcccaccaagcctatggtggtagagcctttctatctatatcctccacttggccattttgttgtccgatacttgcatcaaactgtggc 4788425  T
Q  104 tgttgg 109  Q
    ||||||    
T  4788426 tgttgg 4788431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 6e-60; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 3 - 496
Target Start/End: Original strand, 45984558 - 45985043
Alignment:
Q  3 attattaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtgg 102  Q
    |||||||||||||||||||||||||| |||||||||||| |||| |||   |||||| ||||||||||||||| ||||||||||   | || ||||||||    
T  45984558 attattaagatgattcccaccaagcctatggtggtagagcctttctctctatatcctccactcggccgttttgttgtcagagactggcatcaaactgtgg 45984657  T
Q  103 ctgttggagtcattaaggctgtgaagaagaaggatcctggtgcaggaggtagtatcactaaatcggcattgcagaagtgaattgtgcaggatgatctaaa 202  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||  |||||||| |||  |||| | || |||| |||||| |||||||||      
T  45984658 ctgttggagtcatcaaggctgtgaagaagaaggatcctgctgcaggaggtaaaatcactaagtcgatattgaaaaaatgaactgtgcaagatgatcta-- 45984755  T
Q  203 tttaaatagaaagtgcatcgtcgttattacaataataattagtctttggtcctgagtatttctataccttgtctagtaaacttgttttgcaggttaagtg 302  Q
      |  |  |||| |  ||||| ||||||||    |||| |||||||||||||| |||||||||||  ||  ||||||||||||||||||||| |||||||    
T  45984756 --tctagcgaaa-tctatcgttgttattac---cataaatagtctttggtccttagtatttctatttctcctctagtaaacttgttttgcagattaagtg 45984849  T
Q  303 tcaagtctgcactgtcatat--cagttt----ttgttcctagaactcggttctagattgactgtggcagggctatttcttt--ttcgttttatgctttaa 394  Q
    | ||||||||||  | ||||  ||||||    || |||| |||| | ||||||||||  |  |||| |  ||||||| |||  ||||||||||| | |||    
T  45984850 tgaagtctgcaccattatatcacagttttttcttcttcccagaattgggttctagataaatggtggaatagctatttattttgttcgttttatgttctaa 45984949  T
Q  395 ttattgtgtctaatgtgaacacttggattttgttgacatcaagtttctgaacatgctgagcttgattttgttttgaatatcaattctttatttgtgtatt 494  Q
    |||  ||||||| ||||||||||||||||||| |  || | |||||||| || |||      ||||||||||||||||||||| ||||||||||||| ||    
T  45984950 tta--gtgtctagtgtgaacacttggattttgctagcagcgagtttctggacctgc------tgattttgttttgaatatcaactctttatttgtgtgtt 45985041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 38138729 - 38138921
Alignment:
Q  7 ttaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggctgt 106  Q
    |||||||||||||||||||| ||||||||||||||  |||||||| ||||||| |||| ||||||||||||||||||||||| |||| ||||||||||||    
T  38138729 ttaagatgattcccaccaagtccatggtggtagaggatttttctacttatcctccacttggccgttttgctgtcagagacatgcgtcaaactgtggctgt 38138828  T
Q  107 tggagtcattaaggctgtgaagaagaaggatcctggtgcaggaggtagtatcactaaatcggcattgcagaagtgaattgtgcaggatgatct 199  Q
    ||||||||| | || |||||||||||||||||||  ||||| |||||  ||| |||| | ||||||| ||||||||||  |||||||||||||    
T  38138829 tggagtcatcatggttgtgaagaagaaggatcctcatgcagaaggtaagatcgctaagtaggcattgaagaagtgaatcttgcaggatgatct 38138921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 3 - 427
Target Start/End: Complemental strand, 43044415 - 43043990
Alignment:
Q  3 attattaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtgg 102  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||| | |||||| ||||||||||||||||||| |||||||| |||| ||||||||    
T  43044415 attattaagatgattcccaccaagcccatggtggttgagactttctctgaatatcctccactcggccgttttgctgttagagacatgcgtcaaactgtgg 43044316  T
Q  103 ctgttggagtcattaaggctgtgaagaagaaggatcctggtgcaggaggtagtatcactaaatcggcatt---gcagaagtgaattgtgcaggatgatct 199  Q
    ||||||| ||||| ||||||||| |||||||||||||  ||| ||||  ||     || || || |||||   | |||||||||  | ||||||||||||    
T  43044315 ctgttggggtcatcaaggctgtggagaagaaggatcccagtggaggacttaagcagaccaagtcagcattgaagaagaagtgaaccgagcaggatgatct 43044216  T
Q  200 aaatttaaatagaaagtgcatcgtcgttattacaataataattagtctttggtcctgagtatttctataccttgtctagtaaacttgttttgcaggttaa 299  Q
      |||||  | | |||   ||| | ||||||||   ||||| | |||||||||||| |||||||||||  ||  ||||||  ||||||||| ||  ||||    
T  43044215 --atttacttgggaagcatatcatagttattac---aataaatggtctttggtccttagtatttctatttctcttctagtttacttgtttttcatattaa 43044121  T
Q  300 gtgtcaagtctgcactgtcatatc--agtttttgttcctagaactcggttctagattgactgtggcagggctatttct-ttttcgttttatgctttaatt 396  Q
    |||||||||||||||  |||| ||  || || |||||  |||||| |||||||||| ||| |||||||  |||| ||| ||||  |||||||||||||||    
T  43044120 gtgtcaagtctgcaccttcatctcttagcttgtgttctcagaactgggttctagatcgacggtggcagtactatatctgttttgtttttatgctttaatt 43044021  T
Q  397 attgtgtctaatgtgaacacttggattttgt 427  Q
     ||||||||| | ||||||||||||||||||    
T  43044020 gttgtgtctagtctgaacacttggattttgt 43043990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 3 - 427
Target Start/End: Original strand, 43067576 - 43068000
Alignment:
Q  3 attattaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtgg 102  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||| | |||||| ||||||||||||||||||| |||||||| |||| ||||||||    
T  43067576 attattaagatgattcccaccaagcccatggtggttgagactttctctgaatatcctccactcggccgttttgctgttagagacatgcgtcaaactgtgg 43067675  T
Q  103 ctgttggagtcattaaggctgtgaagaagaaggatcctggtgcaggaggtagtatcactaaatcggcatt---gcagaagtgaattgtgcaggatgatct 199  Q
    ||||||| ||||| || |||||| |||||||||||||  ||| ||||  ||     || || || |||||   | |||||||||  | ||||||||||||    
T  43067676 ctgttggcgtcatcaaagctgtggagaagaaggatcccagtggaggacttaagcagaccaagtcagcattgaagaagaagtgaaccgagcaggatgatct 43067775  T
Q  200 aaatttaaatagaaagtgcatcgtcgttattacaataataattagtctttggtcctgagtatttctataccttgtctagtaaacttgttttgcaggttaa 299  Q
      || ||  | | |||   ||| | ||||||||   ||||| | |||||||||||| |||||||||||  || |||||||  ||||||||| ||  ||||    
T  43067776 --atctacttgggaagcatatcatagttattac---aataaatggtctttggtccttagtatttctatttctagtctagtttacttgtttttcatattaa 43067870  T
Q  300 gtgtcaagtctgcactgtcatatc--agtttttgttcctagaactcggttctagattgactgtggcagggctatttct-ttttcgttttatgctttaatt 396  Q
    |||||||||||||||  |||| ||  || ||||||||  |||||| |||||||||| ||| ||||||| ||| | ||| ||||  |||||||||||||||    
T  43067871 gtgtcaagtctgcaccttcatctcttagcttttgttctcagaactgggttctagatcgacggtggcagcgctctatctgttttatttttatgctttaatt 43067970  T
Q  397 attgtgtctaatgtgaacacttggattttgt 427  Q
     ||||||||| | |||| |||||||||||||    
T  43067971 gttgtgtctagtctgaa-acttggattttgt 43068000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 7891817 - 7891955
Alignment:
Q  3 attattaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtgg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||   ||||||||||| || |||||||||||||||||||| |||| ||||||||    
T  7891817 attattaagatgattcccaccaagcccatggtggtagagacttttactgcatatccttcacttggtcgttttgctgtcagagacatgcgtcaaactgtgg 7891916  T
Q  103 ctgttggagtcattaaggctgtgaagaagaaggatcctg 141  Q
    || |||||||||| |||| ||||||||| ||||||||||    
T  7891917 ctattggagtcatcaaggatgtgaagaataaggatcctg 7891955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 3 - 427
Target Start/End: Complemental strand, 43083259 - 43082835
Alignment:
Q  3 attattaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtgg 102  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||| | |||||| ||||||| ||||||||||| |||||||| |||| ||||||||    
T  43083259 attattaagatgattcccaccaagcccatggtggttgagactttctctgaatatcctccactcggtcgttttgctgttagagacatgcgtcaaactgtgg 43083160  T
Q  103 ctgttggagtcattaaggctgtgaagaagaaggatcctggtgcaggaggtagtatcactaaatcggcatt---gcagaagtgaattgtgcaggatgatct 199  Q
    ||||||| ||||| || |||||| |||||||||||||  ||| ||||  ||     || || || |||||   | ||||||||| || |||||||| |||    
T  43083159 ctgttggcgtcatcaaagctgtggagaagaaggatcccagtggaggacttaagcagaccaagtcagcattgaagaagaagtgaactgagcaggatggtct 43083060  T
Q  200 aaatttaaatagaaagtgcatcgtcgttattacaataataattagtctttggtcctgagtatttctataccttgtctagtaaacttgttttgcaggttaa 299  Q
      || ||  | | |||   ||| | ||||||||   ||||| | ||||| |||||| |||||||||||  || |||||||  ||||||||| ||  ||||    
T  43083059 --atctacttgggaagcatatcatagttattac---aataaatggtcttgggtccttagtatttctatttctcgtctagtttacttgtttttcatattaa 43082965  T
Q  300 gtgtcaagtctgcactgtcatatc--agtttttgttcctagaactcggttctagattgactgtggcagggctatttct-ttttcgttttatgctttaatt 396  Q
    |||||||||||||||  |||| ||  || ||||||||  |||||| |||||||||| ||| ||||||| ||| | ||| ||||  |||||||||||||||    
T  43082964 gtgtcaagtctgcaccttcatctcttagcttttgttctcagaactgggttctagatcgacggtggcagcgctctatctgttttgtttttatgctttaatt 43082865  T
Q  397 attgtgtctaatgtgaacacttggattttgt 427  Q
     ||||||||| | |||| |||||||||||||    
T  43082864 gttgtgtctagtctgaa-acttggattttgt 43082835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 50911855 - 50911744
Alignment:
Q  4 ttattaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggc 103  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||| || | ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  50911855 ttattgagatgattcccaccaagcccatgttggtagagactttttccaaatttccttcactcggccgttttgctgtcagagacatgcgtcaaactgtggc 50911756  T
Q  104 tgttggagtcat 115  Q
    ||||||||||||    
T  50911755 tgttggagtcat 50911744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 3300149 - 3300013
Alignment:
Q  3 attattaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtgg 102  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||| | |||||| |||| |||||||| |||||||| || || ||||  |||||||    
T  3300149 attattaagatgattcccaccaagcccatggtggttgagactttctctgagtatcctccacttggccgtttcgctgtcagggatatgcgtcagactgtgg 3300050  T
Q  103 ctgttggagtcattaaggctgtgaagaagaaggatcc 139  Q
    ||||||| ||||| ||||||||| |||||||||||||    
T  3300049 ctgttggtgtcatcaaggctgtggagaagaaggatcc 3300013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 43077453 - 43077589
Alignment:
Q  3 attattaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtgg 102  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||| | |||||| |||| ||||||||| || |||| ||||  |||| ||||||||    
T  43077453 attattaagatgattcccaccaagcccatggtggttgagactttctctgaatatcctccacttggccgttttactatcagggacaagcgtcaaactgtgg 43077552  T
Q  103 ctgttggagtcattaaggctgtgaagaagaaggatcc 139  Q
    ||||||| ||||| | ||||||| || ||||||||||    
T  43077553 ctgttggtgtcatcacggctgtggagtagaaggatcc 43077589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 273 - 427
Target Start/End: Original strand, 7892138 - 7892295
Alignment:
Q  273 gtctagtaaacttgttttgcaggttaagtgtcaagtctgcactgtcatat--cagtttttgttcctagaactcggttctagattgactgtggcagggcta 370  Q
    |||||||||||||| |||| ||||||||||| | |||||||| ||||| |  ||| |||||||||||||||| | |||||||| | | |||||||| | |    
T  7892138 gtctagtaaacttgctttgtaggttaagtgtgatgtctgcaccgtcatctagcagcttttgttcctagaactggcttctagatcggcggtggcaggtcca 7892237  T
Q  371 tttctttttcgtttt-atgctttaattattgtgtctaatgtgaacacttggattttgt 427  Q
    ||||||||| ||||| ||||| | ||||||||||||| |||||| |||||||||||||    
T  7892238 tttcttttttgtttttatgctatgattattgtgtctagtgtgaatacttggattttgt 7892295  T

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Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 40035570 - 40035691
Alignment:
Q  12 atgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggag 111  Q
    |||||||| ||||||||||||||||||||| ||  | | || ||| ||||||| | ||||||| | ||||||||||  ||||||||||| ||||||||||    
T  40035570 atgattccaaccaagcccatggtggtagagcctaatgcaaaatattcttcacttgcccgttttacagtcagagacacgcgtcgaactgtcgctgttggag 40035669  T
Q  112 tcattaaggctgtgaagaagaa 133  Q
    |||| |||| ||||| ||||||    
T  40035670 tcatcaaggatgtgacgaagaa 40035691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 392
Target Start/End: Complemental strand, 3299875 - 3299761
Alignment:
Q  281 aacttgttttgcaggttaagtgtcaagtctgcactgtcatatc--agtttttgttcctagaactcggttctagattgactgtggcagggctatttctttt 378  Q
    |||||||||| | | ||||||||||||||||||| ||||| ||  |  ||||||||| | |||| |||||| ||| ||| ||||||||||||||||||||    
T  3299875 aacttgtttttcggattaagtgtcaagtctgcaccgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcagggctatttctttt 3299776  T
Q  379 tcgt-tttatgcttt 392  Q
     ||| ||||||||||    
T  3299775 ccgtgtttatgcttt 3299761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 419
Target Start/End: Original strand, 38139003 - 38139132
Alignment:
Q  292 caggttaagtgtcaagtctgcactgtcatat--cagtttttgttcctagaactcggttctagattgactgtggcagggctatttctttttcg-ttttatg 388  Q
    ||||||||||||||||||||||| ||||| |  ||| ||||||||| |||||| | |||||||||||  |||||| |||  ||||||||||| |||||||    
T  38139003 caggttaagtgtcaagtctgcaccgtcatctcacagcttttgttccaagaactggcttctagattgatggtggca-ggccgtttctttttcgtttttatg 38139101  T
Q  389 ctttaattattgtgtctaatgtgaacacttg 419  Q
    || | |||| |||||||  |||||| |||||    
T  38139102 ctatgattactgtgtcttgtgtgaatacttg 38139132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 7e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 4230880 - 4230741
Alignment:
Q  3 attattaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtgg 102  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||| | |||||| |||| |||||||||||||||||||| || || | ||||||||    
T  4230880 attattaagatgattcccaccaagcccatggtggttgagactttctctgaatatcctccacttggccgttttgctgtcagagatatgcggcaaactgtgg 4230781  T
Q  103 ctgttggagtcattaaggctgtgaagaagaaggatcctgg 142  Q
    ||||||| || || |||| |||| |||||||||| |||||    
T  4230780 ctgttggggttatcaagggtgtggagaagaaggaacctgg 4230741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 19965396 - 19965504
Alignment:
Q  7 ttaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggctgt 106  Q
    |||||||||||||| ||||||| |||||||||||| |||| ||| | |||||| |||||||| |||||| ||  |||||||| |||| |||||||||| |    
T  19965396 ttaagatgattcccgccaagcctatggtggtagaggctttctctcaatatcctccactcggctgttttgttgctagagacatgcgtcaaactgtggcttt 19965495  T
Q  107 tggagtcat 115  Q
    |||||||||    
T  19965496 tggagtcat 19965504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 16348564 - 16348412
Alignment:
Q  1 gcattattaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgt 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||  ||||||||| |  | || ||||||    
T  16348564 gcattattcagatgattcccaccaagcccatggtggtagagactttttctgaatatccttcactcggccgttttattgtcagagatacgcatcaaactgt 16348465  T
Q  101 ggctgttggagtcattaaggctgtgaagaagaaggatcctggtgcaggaggta 153  Q
    |||| ||||| ||||   || |||||| |||||||||||| ||| | ||||||    
T  16348464 ggctattggaatcatcttggttgtgaacaagaaggatcctagtgaaagaggta 16348412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 6 - 140
Target Start/End: Original strand, 7530127 - 7530261
Alignment:
Q  6 attaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggctg 105  Q
    ||||||||| |||||||||||||||||||||| ||||| ||| || | |||||| | || || |||||||||||||| ||||| |||| |||||| ||||    
T  7530127 attaagatggttcccaccaagcccatggtggttgagacctttgctgaatatcctcctcttggacgttttgctgtcagggacatgcgtcaaactgttgctg 7530226  T
Q  106 ttggagtcattaaggctgtgaagaagaaggatcct 140  Q
    |||| ||||| ||||||||| ||||||||||||||    
T  7530227 ttggtgtcatcaaggctgtggagaagaaggatcct 7530261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 7520590 - 7520723
Alignment:
Q  6 attaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggctg 105  Q
    ||||||||| |||||||||||||||||||||| ||||| ||  || | |||||| | || || |||||||| ||||| ||||| |||| |||||| ||||    
T  7520590 attaagatggttcccaccaagcccatggtggttgagaccttcgctgaatatcctcctcttggacgttttgccgtcagggacatgcgtcaaactgttgctg 7520689  T
Q  106 ttggagtcattaaggctgtgaagaagaaggatcc 139  Q
    |||| ||||| ||||||||| |||||||||||||    
T  7520690 ttggtgtcatcaaggctgtggagaagaaggatcc 7520723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 33860247 - 33860137
Alignment:
Q  5 tattaagatgattcccaccaagcccatggtggtagagactttttctaattatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggct 104  Q
    |||||||||||||||||||||||| ||||||||||||  |||  || |||||||| ||||||||||||||| ||  |||||||  |||| ||||||||||    
T  33860247 tattaagatgattcccaccaagcctatggtggtagaggatttcgcttattatcctccactcggccgttttgttgcgagagacaggcgtcaaactgtggct 33860148  T
Q  105 gttggagtcat 115  Q
     |||| |||||    
T  33860147 tttggcgtcat 33860137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 16231545 - 16231466
Alignment:
Q  54 tatccttcactcggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcattaaggctgtgaagaagaa 133  Q
    |||||||| || || |||||||||||||||||||| |||| ||||||||||||||||||||| | | |||| ||||||||    
T  16231545 tatccttcccttggtcgttttgctgtcagagacatgcgtcaaactgtggctgttggagtcataatgtctgtaaagaagaa 16231466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 34690192 - 34690143
Alignment:
Q  66 ggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcat 115  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| ||||    
T  34690192 ggccgttttgctgtcagagacatgcgtcaaactgtggctgttggaatcat 34690143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 34712604 - 34712555
Alignment:
Q  66 ggccgttttgctgtcagagacatacgtcgaactgtggctgttggagtcat 115  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| ||||    
T  34712604 ggccgttttgctgtcagagacatgcgtcaaactgtggctgttggaatcat 34712555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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