View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8755_low_5 (Length: 539)
Name: NF8755_low_5
Description: NF8755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8755_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 53 - 522
Target Start/End: Original strand, 30748298 - 30748780
Alignment:
| Q |
53 |
tggcactgagagcagctatactccgccatgttcgtattccaatccaatccactccaaaattacaaccatggaatggttccattcgatccatgtcttcaca |
152 |
Q |
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| T |
30748298 |
tggcactgagagcagctatactccgccatgttcgtattccaatccaatccactccaaaattacaaccatggaatggttccattcgatccatgtcttcaca |
30748397 |
T |
|
| Q |
153 |
cgacgatcatatcaccaaagaagaagtcgtcgagcgagtcctctctgtcatcaaagatttccccaaagttgatccttcaaaggtttcttcttttcctatt |
252 |
Q |
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| T |
30748398 |
cgacgatcatatcaccaaagaagaagtcgtcgagcgagtcctctctgtcatcaaagatttccccaaagttgatccttcaaaggtttcttcttttcctatt |
30748497 |
T |
|
| Q |
253 |
ttccccttcattttgcataatttttagtcttgattactgtaagataggggg-aaaaaactgagaaatgagtattcataattgttattctgttgatttgtc |
351 |
Q |
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| T |
30748498 |
ttccccttcattttgcataatttttagtctttattactgtaagatagggggaaaaaaactgagaaatgagtatgcataattgttattctgttgatttgtc |
30748597 |
T |
|
| Q |
352 |
caaatgggtttcccccaaaatttggaattgagaaaaatgtttaataggtaacctaaatcactattctgttgatttattcaaaaggnnnnnnngctaaagt |
451 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
30748598 |
caaatgggtttcccccaaaatttggaattgagaaaaatgtgtaataggtaacctaaatcactattatgttgatttattcaaaaggtttttttgctaaagt |
30748697 |
T |
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| Q |
452 |
ttggaaat------------ttacctgggtggtgtttgtaataatgttaaaaggctaaaagttgtgcaatgtgtgtcccaagt |
522 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30748698 |
ttggaaatttaccttaataattacctgggtggtgtttgtaataatgttaaaaggctaaaagatgtgcaatgtgtgtcccaagt |
30748780 |
T |
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