View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8755_low_6 (Length: 521)

Name: NF8755_low_6
Description: NF8755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8755_low_6
NF8755_low_6
[»] chr6 (9 HSPs)
chr6 (143-366)||(14583248-14583470)
chr6 (361-498)||(22555735-22555881)
chr6 (394-488)||(29043980-29044074)
chr6 (405-498)||(31347056-31347149)
chr6 (394-498)||(10444863-10444967)
chr6 (394-488)||(35056063-35056157)
chr6 (361-399)||(23498479-23498517)
chr6 (361-422)||(22555911-22555972)
chr6 (440-488)||(18400880-18400928)
[»] chr5 (10 HSPs)
chr5 (143-366)||(19076792-19077014)
chr5 (411-498)||(21402198-21402285)
chr5 (361-472)||(6551977-6552091)
chr5 (411-498)||(16062324-16062410)
chr5 (395-498)||(26748736-26748838)
chr5 (439-498)||(14027251-14027310)
chr5 (416-487)||(26646240-26646311)
chr5 (439-498)||(12354757-12354816)
chr5 (439-488)||(8834559-8834608)
chr5 (412-488)||(21419632-21419708)
[»] chr4 (18 HSPs)
chr4 (361-498)||(46739740-46739877)
chr4 (361-498)||(26444453-26444590)
chr4 (394-498)||(55581994-55582098)
chr4 (394-488)||(9621284-9621378)
chr4 (361-472)||(35659256-35659361)
chr4 (405-498)||(45315532-45315625)
chr4 (439-498)||(12621971-12622030)
chr4 (439-498)||(16027478-16027537)
chr4 (394-498)||(13163833-13163937)
chr4 (445-497)||(14628964-14629016)
chr4 (412-488)||(25512337-25512413)
chr4 (411-498)||(17958038-17958125)
chr4 (439-498)||(46225797-46225856)
chr4 (439-497)||(44024943-44025001)
chr4 (361-422)||(26444620-26444681)
chr4 (394-498)||(10282818-10282922)
chr4 (361-399)||(35659423-35659461)
chr4 (394-498)||(10272096-10272200)
[»] chr3 (16 HSPs)
chr3 (394-498)||(15026328-15026432)
chr3 (394-498)||(12539982-12540086)
chr3 (394-497)||(50352349-50352452)
chr3 (390-498)||(54331774-54331882)
chr3 (390-498)||(17206600-17206708)
chr3 (404-488)||(50756685-50756769)
chr3 (394-488)||(21846736-21846826)
chr3 (394-488)||(3528620-3528714)
chr3 (394-488)||(25200789-25200883)
chr3 (439-488)||(16180752-16180801)
chr3 (394-470)||(12918503-12918579)
chr3 (439-497)||(11561704-11561762)
chr3 (439-488)||(11191139-11191188)
chr3 (439-488)||(12860584-12860633)
chr3 (440-488)||(48630158-48630206)
chr3 (439-498)||(17668878-17668937)
[»] scaffold0231 (2 HSPs)
scaffold0231 (363-498)||(19196-19331)
scaffold0231 (370-422)||(19112-19164)
[»] chr8 (21 HSPs)
chr8 (394-485)||(22343749-22343840)
chr8 (394-485)||(22355409-22355500)
chr8 (394-498)||(20518390-20518494)
chr8 (359-488)||(18820481-18820618)
chr8 (394-483)||(5079691-5079780)
chr8 (405-498)||(38988018-38988111)
chr8 (405-498)||(39019115-39019208)
chr8 (439-497)||(12800180-12800238)
chr8 (439-488)||(6574450-6574499)
chr8 (439-487)||(36406722-36406770)
chr8 (405-488)||(17979785-17979868)
chr8 (405-468)||(21513007-21513070)
chr8 (439-498)||(36733978-36734037)
chr8 (430-471)||(22482567-22482608)
chr8 (439-484)||(36729229-36729274)
chr8 (442-498)||(22473015-22473071)
chr8 (394-498)||(23885314-23885417)
chr8 (439-498)||(2718174-2718233)
chr8 (361-399)||(20025488-20025526)
chr8 (361-422)||(36406271-36406332)
chr8 (394-498)||(22310710-22310814)
[»] scaffold0056 (1 HSPs)
scaffold0056 (394-498)||(15102-15206)
[»] chr2 (14 HSPs)
chr2 (394-488)||(36733125-36733219)
chr2 (394-498)||(45679139-45679243)
chr2 (404-498)||(22685430-22685524)
chr2 (394-498)||(36737278-36737382)
chr2 (394-498)||(25587981-25588084)
chr2 (411-488)||(14180829-14180906)
chr2 (439-497)||(25138574-25138632)
chr2 (424-498)||(44761812-44761886)
chr2 (390-498)||(21317115-21317222)
chr2 (362-422)||(21336977-21337037)
chr2 (405-498)||(1385234-1385327)
chr2 (390-498)||(21337105-21337212)
chr2 (361-399)||(1385181-1385219)
chr2 (362-422)||(21316987-21317047)
[»] scaffold0453 (1 HSPs)
scaffold0453 (390-498)||(6090-6198)
[»] scaffold0011 (1 HSPs)
scaffold0011 (390-470)||(39387-39467)
[»] scaffold1256 (2 HSPs)
scaffold1256 (391-498)||(784-891)
scaffold1256 (361-422)||(554-615)
[»] scaffold0004 (3 HSPs)
scaffold0004 (394-488)||(64787-64881)
scaffold0004 (394-488)||(74237-74331)
scaffold0004 (394-483)||(67481-67571)
[»] chr1 (12 HSPs)
chr1 (405-498)||(6832890-6832983)
chr1 (404-498)||(21350679-21350773)
chr1 (390-498)||(17904459-17904567)
chr1 (405-498)||(28478044-28478137)
chr1 (405-488)||(18120243-18120326)
chr1 (411-488)||(12709691-12709768)
chr1 (439-488)||(44891141-44891190)
chr1 (439-498)||(24721227-24721286)
chr1 (411-488)||(12709356-12709433)
chr1 (404-488)||(39052067-39052151)
chr1 (449-488)||(12712997-12713036)
chr1 (361-422)||(44891263-44891324)
[»] chr7 (21 HSPs)
chr7 (361-498)||(9744512-9744659)
chr7 (405-498)||(4692020-4692113)
chr7 (405-470)||(9255732-9255797)
chr7 (405-470)||(9314453-9314518)
chr7 (402-498)||(11314465-11314561)
chr7 (390-498)||(48217919-48218027)
chr7 (411-488)||(11314406-11314483)
chr7 (439-498)||(15577365-15577424)
chr7 (405-487)||(43747143-43747225)
chr7 (430-498)||(9255772-9255840)
chr7 (430-498)||(9314410-9314478)
chr7 (439-487)||(13134363-13134411)
chr7 (394-498)||(37538036-37538139)
chr7 (394-488)||(33557360-33557454)
chr7 (405-465)||(14154347-14154407)
chr7 (394-498)||(25941030-25941134)
chr7 (394-473)||(36301903-36301982)
chr7 (412-498)||(18985613-18985699)
chr7 (412-498)||(19000241-19000327)
chr7 (361-422)||(9744421-9744482)
chr7 (394-498)||(38294114-38294218)
[»] scaffold0108 (1 HSPs)
scaffold0108 (361-498)||(8285-8431)
[»] scaffold0063 (2 HSPs)
scaffold0063 (361-498)||(61307-61453)
scaffold0063 (361-422)||(61483-61544)
[»] scaffold0628 (1 HSPs)
scaffold0628 (362-498)||(4913-5058)
[»] scaffold0230 (1 HSPs)
scaffold0230 (394-498)||(8121-8225)
[»] scaffold0174 (3 HSPs)
scaffold0174 (394-498)||(3648-3752)
scaffold0174 (394-498)||(9770-9874)
scaffold0174 (406-498)||(14746-14838)
[»] scaffold0379 (2 HSPs)
scaffold0379 (394-498)||(9245-9350)
scaffold0379 (394-498)||(16437-16542)
[»] scaffold0123 (1 HSPs)
scaffold0123 (405-488)||(15567-15650)
[»] scaffold0125 (1 HSPs)
scaffold0125 (411-488)||(24306-24382)
[»] scaffold0121 (1 HSPs)
scaffold0121 (439-498)||(18880-18939)
[»] scaffold0394 (1 HSPs)
scaffold0394 (394-488)||(8508-8602)
[»] scaffold0005 (1 HSPs)
scaffold0005 (445-497)||(188367-188419)
[»] scaffold0505 (1 HSPs)
scaffold0505 (439-498)||(3458-3517)
[»] scaffold0213 (1 HSPs)
scaffold0213 (439-498)||(17759-17818)
[»] scaffold0645 (1 HSPs)
scaffold0645 (439-497)||(933-991)
[»] scaffold0113 (1 HSPs)
scaffold0113 (444-497)||(33449-33502)
[»] scaffold1716 (1 HSPs)
scaffold1716 (440-488)||(1377-1425)
[»] scaffold0205 (1 HSPs)
scaffold0205 (440-488)||(6854-6902)
[»] scaffold0017 (1 HSPs)
scaffold0017 (439-498)||(25177-25236)
[»] scaffold0742 (1 HSPs)
scaffold0742 (405-498)||(2656-2749)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 5e-85; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 143 - 366
Target Start/End: Complemental strand, 14583470 - 14583248
Alignment:
Q  143 tgaattagtgattatagcatccatataggtcagtagcatgtgaccatatttatggtagaaaccaatcaatcttgatataaaaaccatataaaataactac 242  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||| | |||| ||||||||||    
T  14583470 tgaattagtgattatagcatccatataggttagtagcatgtaaccatatttatggtagaaaccaatcaatattgatataaaa-ctatatgaaataactac 14583372  T
Q  243 ctctgaaattatgtccctttctcttggaccttttgttgccgaatgtgataggttcgtagggttaagcttaaggttataccttactactatattagttaat 342  Q
    || |||||||||||||||||||||| |||||||||||| |||| ||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  14583371 ctgtgaaattatgtccctttctcttagaccttttgttgtcgaacgtggtaggttcatagggttaagcttaaggttatatcttactactatattagttaat 14583272  T
Q  343 taatgtattatagtttcaatgtga 366  Q
    ||||||||| ||| ||||||||||    
T  14583271 taatgtattctagcttcaatgtga 14583248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 361 - 498
Target Start/End: Complemental strand, 22555881 - 22555735
Alignment:
Q  361 atgtgaaggatcaatattatttatcgtttttgtttatgt---------gcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctctta 451  Q
    |||||||||||||||||||||||||||| ||||||||||         | || ||||| ||||||||||||||||||||||  ||| |||||| ||||||    
T  22555881 atgtgaaggatcaatattatttatcgttgttgtttatgttgtttatatgaagcattgttgatgatgatttgctgttgttttatgttgataaatcctctta 22555782  T
Q  452 cttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
      |||||||||||||||||| | |||||||||||||| | |||||||    
T  22555781 tctaaattattgtttattagaattgctaatgatgaatagatgttgtt 22555735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 394 - 488
Target Start/End: Complemental strand, 29044074 - 29043980
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||||| | |||||| ||||||||||||||||||||||  ||| |||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  29044074 ttatgtgaactattgttgatgatgatttgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatgaat 29043980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 498
Target Start/End: Original strand, 31347056 - 31347149
Alignment:
Q  405 attgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||| |||||||| ||| |||||||||  |||  ||||||||||||||||| | |||||||||||||| || | ||||| ||| |||||||||    
T  31347056 attgttgatgatgaattgatgttgttttatgttgttaaattctcttacttaactcattgtttattagtattgttgatgataaattgttgttgtt 31347149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 498
Target Start/End: Complemental strand, 10444967 - 10444863
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttg 493  Q
    ||||||| |||||||| |||||||| || || |||||||| |||  ||||||||||||||| | | ||||||||| |||| || | ||||| ||| ||||    
T  10444967 ttatgtgaagtattgttgatgatgaattactattgttttgtgttgttaaattctcttacttgactcattgtttatcagtattgttgatgataaattgttg 10444868  T
Q  494 ttgtt 498  Q
    |||||    
T  10444867 ttgtt 10444863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 488
Target Start/End: Complemental strand, 35056157 - 35056063
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||||| |||||||| |||||||| ||  ||||| |||| |||  ||||||||||||||| | | |||||||||||||| || | |||||||||    
T  35056157 ttatgtgaagtattgttgatgatgaattattgttgctttgtgttgttaaattctcttacttgactcattgtttattagtattgttgatgatgaat 35056063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 399
Target Start/End: Original strand, 23498479 - 23498517
Alignment:
Q  361 atgtgaaggatcaatattatttatcgtttttgtttatgt 399  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  23498479 atgtgaagtatcaatattatttatcgttgttgtttatgt 23498517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 422
Target Start/End: Complemental strand, 22555972 - 22555911
Alignment:
Q  361 atgtgaaggatcaatattatttatcgtttttgtttatgtgcagtattgtcgatgatgatttg 422  Q
    |||||||  ||||||||||||||| ||| ||||||||||| || |||||  |||||||||||    
T  22555972 atgtgaactatcaatattatttattgttgttgtttatgtgaagcattgttaatgatgatttg 22555911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 18400928 - 18400880
Alignment:
Q  440 taaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    |||||||||||||||||||||| || |||||||  | ||||||||||||    
T  18400928 taaattctcttacttaaattatcgtctattagttttactaatgatgaat 18400880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 143 - 366
Target Start/End: Complemental strand, 19077014 - 19076792
Alignment:
Q  143 tgaattagtgattatagcatccatataggtcagtagcatgtgaccatatttatggtagaaaccaatcaatcttgatataaaaaccatataaaataactac 242  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||| | |||| ||||||||||    
T  19077014 tgaattagtgattatagcatccatataggttagtagcatgtaaccatatttatggtagaaaccaatcaatattgatataaaa-ctatatgaaataactac 19076916  T
Q  243 ctctgaaattatgtccctttctcttggaccttttgttgccgaatgtgataggttcgtagggttaagcttaaggttataccttactactatattagttaat 342  Q
    || |||||||||||||||||||||| |||||||||||| |||| ||| ||||||| ||||||||||||||| |||||| |||||||||||||||||||||    
T  19076915 ctgtgaaattatgtccctttctcttagaccttttgttgtcgaacgtggtaggttcatagggttaagcttaacgttatatcttactactatattagttaat 19076816  T
Q  343 taatgtattatagtttcaatgtga 366  Q
    ||||||||| ||| ||||||||||    
T  19076815 taatgtattctagcttcaatgtga 19076792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 411 - 498
Target Start/End: Original strand, 21402198 - 21402285
Alignment:
Q  411 gatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||||||||||||||||||| |||  | ||||||||||||| |||||||||||||||||| |||||||||||||| | |||||||    
T  21402198 gatgatgatttgctgttgttttgtgttggtgaattctcttacttgaattattgtttattagtattgctaatgatgaatagatgttgtt 21402285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 361 - 472
Target Start/End: Original strand, 6551977 - 6552091
Alignment:
Q  361 atgtgaaggatcaatattatttatcgtttttgtt---tatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaa 457  Q
    |||||||| ||||||||||||||| ||| |||||   |||| | || ||||| |||||||||||| ||||||| || ||| ||||||||||| |||||||    
T  6551977 atgtgaagtatcaatattatttattgttgttgttgtttatgagaagcattgttgatgatgatttgttgttgttctgtgttgataaattctctcacttaaa 6552076  T
Q  458 ttattgtttattagt 472  Q
    |||||||||||||||    
T  6552077 ttattgtttattagt 6552091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 411 - 498
Target Start/End: Complemental strand, 16062410 - 16062324
Alignment:
Q  411 gatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    |||||||||||| |||||||||  ||| |||||| ||||||  |||||||||||||||||||| |||||||||||||| | |||||||    
T  16062410 gatgatgatttgttgttgttttatgttgataaat-ctcttatctaaattattgtttattagtattgctaatgatgaatagatgttgtt 16062324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 395 - 498
Target Start/End: Complemental strand, 26748838 - 26748736
Alignment:
Q  395 tatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgt 494  Q
    |||||| | |||||| |||||||||||||||| |||||  || | ||||||| ||||  |||||||||||||||||||| |||||||||||||| | |||    
T  26748838 tatgtgaactattgttgatgatgatttgctgtggttttatgtga-taaattcacttatctaaattattgtttattagtattgctaatgatgaatagatgt 26748740  T
Q  495 tgtt 498  Q
    ||||    
T  26748739 tgtt 26748736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 498
Target Start/End: Original strand, 14027251 - 14027310
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||||| | |||||||    
T  14027251 ataaattctcttacttaaattattgtttattagttttactaatgatgaatagatgttgtt 14027310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 487
Target Start/End: Complemental strand, 26646311 - 26646240
Alignment:
Q  416 tgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaa 487  Q
    ||||||||||||||| || ||| |||||||||||| ||||| |||||||||||||||  | |||||||||||    
T  26646311 tgatttgctgttgttctgtgttgataaattctcttgcttaagttattgtttattagttttactaatgatgaa 26646240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 498
Target Start/End: Complemental strand, 12354816 - 12354757
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||| ||||||||||||||||||||||||||  | |||||||||||| | |||||||    
T  12354816 ataaattttcttacttaaattattgtttattagttttactaatgatgaatagatgttgtt 12354757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 8834559 - 8834608
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||||||||||||||||||||||||| ||||||  | ||||||||||||    
T  8834559 ataaattctcttacttaaattattgttaattagttttactaatgatgaat 8834608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 488
Target Start/End: Complemental strand, 21419708 - 21419632
Alignment:
Q  412 atgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||||| |||||||||||||| |||  |||| ||| |||| | |||||||| ||||||| | || |||||||||||    
T  21419708 atgatgaattgctgttgttttgtgttgttaaaatcttttacatgaattattgcttattagcattgttaatgatgaat 21419632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 7e-41; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 361 - 498
Target Start/End: Complemental strand, 46739877 - 46739740
Alignment:
Q  361 atgtgaaggatcaatattatttatcgtttttgtttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaatta 460  Q
    |||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||| |||||||||| ||| ||||||||||||||||||||||    
T  46739877 atgtgaaggatcaatattatttatcgttgttgtttatgtgaagcattgttgatgatgatttgttgttgttttgtgttgataaattctcttacttaaatta 46739778  T
Q  461 ttgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||||||||  | |||| ||||||| | |||||||    
T  46739777 ttgtttattagttttactaaagatgaataggtgttgtt 46739740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 361 - 498
Target Start/End: Complemental strand, 26444590 - 26444453
Alignment:
Q  361 atgtgaaggatcaatattatttatcgtttttgtttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaatta 460  Q
    |||||||||||||||||||||||| ||| ||||||||||| || ||||| |||||||||||| ||||||| || ||| ||||||| |||| ||||||| |    
T  26444590 atgtgaaggatcaatattatttattgttgttgtttatgtgaagcattgttgatgatgatttgttgttgttctgtgttgataaattatcttgcttaaatca 26444491  T
Q  461 ttgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||||||||  | |||| ||||||| | |||||||    
T  26444490 ttgtttattagttttactaaagatgaataggtgttgtt 26444453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 498
Target Start/End: Complemental strand, 55582098 - 55581994
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttg 493  Q
    ||||||| | |||||| ||||||||||||||||||||||  ||| |||||||||||||  |||||||||||||||||||| |||||||||||||| | ||    
T  55582098 ttatgtgaactattgttgatgatgatttgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatgaatagatg 55581999  T
Q  494 ttgtt 498  Q
    |||||    
T  55581998 ttgtt 55581994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 394 - 488
Target Start/End: Complemental strand, 9621378 - 9621284
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||||| |||||||| |||||||| || ||||||||||| |||  |||||||||  || |||||||||||||||||||| || |||||||||||    
T  9621378 ttatgtgaagtattgttgatgatgaattactgttgttttgtgttgttaaattctcccacataaattattgtttattagtattgttaatgatgaat 9621284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 361 - 472
Target Start/End: Complemental strand, 35659361 - 35659256
Alignment:
Q  361 atgtgaaggatcaatattatttatcgtttttgtttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaatta 460  Q
    |||||||||||||||||||||||||||| ||||      | || ||| | |||||||||||| ||||| | |  ||| ||||||||||||||||||||||    
T  35659361 atgtgaaggatcaatattatttatcgttgttgt------gaagcattcttgatgatgatttgttgttgctctatgttgataaattctcttacttaaatta 35659268  T
Q  461 ttgtttattagt 472  Q
    ||||||||||||    
T  35659267 ttgtttattagt 35659256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 405 - 498
Target Start/End: Original strand, 45315532 - 45315625
Alignment:
Q  405 attgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||| ||||||||| || |||||| ||| ||| ||||||| ||||||||||||||||||| ||||||  | |||||||||||| | |||||||    
T  45315532 attgttgatgatgatatgttgttgtattgtgttgataaattttcttacttaaattattgttaattagttttactaatgatgaatagatgttgtt 45315625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 498
Target Start/End: Complemental strand, 12622030 - 12621971
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||||| | |||||||    
T  12622030 ataaattctcttacttaaattattgtttattagttttactaatgatgaatagatgttgtt 12621971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 498
Target Start/End: Original strand, 16027478 - 16027537
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||||| | |||||||    
T  16027478 ataaattctcttacttaaattattgtttattagttttactaatgatgaatagatgttgtt 16027537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 498
Target Start/End: Complemental strand, 13163937 - 13163833
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttg 493  Q
    ||||||| || ||||| |||||||| ||| || ||||||| |||  ||||||||||||||| | | |||||||||||||| || | ||||| ||| ||||    
T  13163937 ttatgtgaagcattgttgatgatgaattgatgctgttttgtgttgttaaattctcttacttgactcattgtttattagtattgttgatgataaattgttg 13163838  T
Q  494 ttgtt 498  Q
    |||||    
T  13163837 ttgtt 13163833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 445 - 497
Target Start/End: Complemental strand, 14629016 - 14628964
Alignment:
Q  445 tctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgt 497  Q
    |||||||||||||||| |||||||||||| |||||||||||||| | ||||||    
T  14629016 tctcttacttaaattactgtttattagtattgctaatgatgaatagatgttgt 14628964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 488
Target Start/End: Complemental strand, 25512413 - 25512337
Alignment:
Q  412 atgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||||||||| |||||  ||| ||| ||||||  ||||||||||||||||||||||||||  | ||||||||||||    
T  25512413 atgatgatttgttgttgcattgtgttgataaatattcttacttaaattattgtttattagttttactaatgatgaat 25512337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 498
Target Start/End: Complemental strand, 17958125 - 17958038
Alignment:
Q  411 gatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||||||||| ||||||||| |||  | | |||||| || | | |||||||||||||||| |||||||||||||| | |||||||    
T  17958125 gatgatgatttgccgttgttttgtgttggtgatttctctcacatgagttattgtttattagtattgctaatgatgaatagatgttgtt 17958038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 498
Target Start/End: Original strand, 46225797 - 46225856
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||||||||||||||||||||||||||||||  | |||| ||||||| | |||||||    
T  46225797 ataaattctcttacttaaattattgtttattagttttactaaagatgaataggtgttgtt 46225856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 497
Target Start/End: Original strand, 44024943 - 44025001
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgt 497  Q
    |||| ||||||||||||||||| ||||||| |||| |||||||||||||| | ||||||    
T  44024943 ataagttctcttacttaaattaatgtttatcagtattgctaatgatgaatagatgttgt 44025001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 361 - 422
Target Start/End: Complemental strand, 26444681 - 26444620
Alignment:
Q  361 atgtgaaggatcaatattatttatcgtttttgtttatgtgcagtattgtcgatgatgatttg 422  Q
    |||||||| ||||||||||||||| ||| ||||||||||| || |||||  |||||||||||    
T  26444681 atgtgaagtatcaatattatttattgttgttgtttatgtgaagcattgttaatgatgatttg 26444620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 498
Target Start/End: Complemental strand, 10282922 - 10282818
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttg 493  Q
    ||||||| |||||||  |||||||| || ||||||||||| |||  ||||||||||||||| | | ||| |||||||||| || | ||||| |||  |||    
T  10282922 ttatgtgaagtattgctgatgatgaattactgttgttttgtgttgttaaattctcttactttactcattatttattagtattgttgatgataaatttttg 10282823  T
Q  494 ttgtt 498  Q
    |||||    
T  10282822 ttgtt 10282818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 399
Target Start/End: Complemental strand, 35659461 - 35659423
Alignment:
Q  361 atgtgaaggatcaatattatttatcgtttttgtttatgt 399  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  35659461 atgtgaaggatcaatattatttattgttgttgtttatgt 35659423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 498
Target Start/End: Complemental strand, 10272200 - 10272096
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttg 493  Q
    ||||||| |||||||   ||||||| || ||||||||||| |||  ||||||||||||||| | | ||| |||||||||| || | ||||| |||  |||    
T  10272200 ttatgtgaagtattgctcatgatgaattactgttgttttgtgttgttaaattctcttactttactcattatttattagtattgttgatgataaatttttg 10272101  T
Q  494 ttgtt 498  Q
    |||||    
T  10272100 ttgtt 10272096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 394 - 498
Target Start/End: Original strand, 15026328 - 15026432
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttg 493  Q
    ||||||| || ||||| ||||||||||||  ||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | ||    
T  15026328 ttatgtgaagcattgttgatgatgatttgtcgttgttttgtgttgataaattctcttacttaaattattgtttattagtattgctaatgatgaattgatg 15026427  T
Q  494 ttgtt 498  Q
    |||||    
T  15026428 ttgtt 15026432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 394 - 498
Target Start/End: Complemental strand, 12540086 - 12539982
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttg 493  Q
    ||||||| | |||||| |||||||||||| |||||||||  ||| ||| |||||||||  |||||||||||||||||||| |||||||||||||| | ||    
T  12540086 ttatgtgaactattgttgatgatgatttgttgttgttttatgttgatatattctcttatctaaattattgtttattagtattgctaatgatgaatagatg 12539987  T
Q  494 ttgtt 498  Q
    |||||    
T  12539986 ttgtt 12539982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 394 - 497
Target Start/End: Original strand, 50352349 - 50352452
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttg 493  Q
    ||||||| | |||||| ||||||||| ||||||||||||  ||  |||||||||||||  |||||||||||||||||||| | |||||||||||| | ||    
T  50352349 ttatgtgaactattgttgatgatgatctgctgttgttttatgtggataaattctcttatctaaattattgtttattagtatttctaatgatgaatagatg 50352448  T
Q  494 ttgt 497  Q
    ||||    
T  50352449 ttgt 50352452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 390 - 498
Target Start/End: Original strand, 54331774 - 54331882
Alignment:
Q  390 ttgtttatgtgcagtattgtcgatgatgattt-gctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||||||||| ||| |||| ||||||||||| | ||||||| |||||| |||||||||||||||| |||||||||||||||||  | |||| |||||||    
T  54331774 ttgtttatgtgaagtgttgttgatgatgattttgttgttgttctgcgttgataaattctcttactt-aattattgtttattagttttactaaagatgaat 54331872  T
Q  489 cgttgttgtt 498  Q
     | |||||||    
T  54331873 aggtgttgtt 54331882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 498
Target Start/End: Complemental strand, 17206708 - 17206600
Alignment:
Q  390 ttgtttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatc 489  Q
    ||||||||||| || ||||| |||| ||||||| || |||| || ||| ||||||||||| ||||||||||||||||||||||  | |||| |||||||     
T  17206708 ttgtttatgtgaagcattgttgatgttgatttgttgctgttctgtgttgataaattctctcacttaaattattgtttattagttttactaaagatgaata 17206609  T
Q  490 gttgttgtt 498  Q
    | |||||||    
T  17206608 ggtgttgtt 17206600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 404 - 488
Target Start/End: Original strand, 50756685 - 50756769
Alignment:
Q  404 tattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    |||||| |||||||||||| |||||||||  ||| |||||||||||||  |||||||||||||||||||| || | |||||||||    
T  50756685 tattgttgatgatgatttgttgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatgaat 50756769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 488
Target Start/End: Original strand, 21846736 - 21846826
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||||| || ||||| ||||||||||||||||||||||| ||| ||||||||| ||||    ||||||||||||||||  || |||||||||||    
T  21846736 ttatgtgaagcattgttgatgatgatttgctgttgttttgtgttgataaattcttttac----attattgtttattagtgttgttaatgatgaat 21846826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 394 - 488
Target Start/End: Original strand, 3528620 - 3528714
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||||| |||||||| | |||||| || ||||||||||| |||  ||||||||||||||| | | ||| |||||||||| || |||||||||||    
T  3528620 ttatgtgaagtattgttgttgatgaattactgttgttttgtgttgttaaattctcttacttgactcattatttattagtattgttaatgatgaat 3528714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 394 - 488
Target Start/End: Complemental strand, 25200883 - 25200789
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||||| || ||||| ||| |||| |||| ||||||| | |||  |||||||||| || |||||||||||||||||||| || |||||||||||    
T  25200883 ttatgtgaagcattgttgataatgaattgccgttgtttcgagttgttaaattctctcacataaattattgtttattagtattgttaatgatgaat 25200789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 16180752 - 16180801
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    |||| ||||||||||||||||| |||||||||||| ||||||||||||||    
T  16180752 ataagttctcttacttaaattactgtttattagtattgctaatgatgaat 16180801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 470
Target Start/End: Original strand, 12918503 - 12918579
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttatta 470  Q
    ||||||| |||||||| |||||||| || ||||||||||| |||  ||||||||||||||| | | |||||||||||    
T  12918503 ttatgtgaagtattgttgatgatgaattactgttgttttgtgttgctaaattctcttacttgactcattgtttatta 12918579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 497
Target Start/End: Complemental strand, 11561762 - 11561704
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgt 497  Q
    |||| ||||||||||||||||| | |||||| ||| |||||||||||||| ||||||||    
T  11561762 ataagttctcttacttaaattactatttatttgtattgctaatgatgaatagttgttgt 11561704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 439 - 488
Target Start/End: Complemental strand, 11191188 - 11191139
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    |||| ||||||||||||||||| |||||||||||| | ||||||||||||    
T  11191188 ataagttctcttacttaaattactgtttattagtattactaatgatgaat 11191139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 12860584 - 12860633
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    |||||||||||||||||||||||||||||||| |  | ||||||||||||    
T  12860584 ataaattctcttacttaaattattgtttattaattttactaatgatgaat 12860633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 48630206 - 48630158
Alignment:
Q  440 taaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    |||||||||| || |||||||||||||||||||| || |||||||||||    
T  48630206 taaattctctcacataaattattgtttattagtattgttaatgatgaat 48630158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 498
Target Start/End: Complemental strand, 17668937 - 17668878
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||||||||||||||| ||||||||||||||  | |||||||| ||| | |||||||    
T  17668937 ataaattctcttacttaaactattgtttattagttttactaatgataaatagatgttgtt 17668878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 363 - 498
Target Start/End: Original strand, 19196 - 19331
Alignment:
Q  363 gtgaaggatcaatattatttatcgtttttgtttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattatt 462  Q
    |||||| || ||||| |||||||||| ||||||||||| || ||||| |||||| |||| ||||||||||  ||| |||||| ||||||  |||||||||    
T  19196 gtgaagaataaatataatttatcgttgttgtttatgtgaagcattgttgatgataatttactgttgttttatgttgataaatcctcttatctaaattatt 19295  T
Q  463 gtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||||||| |||||||||||||| | |||||||    
T  19296 gtttattagtattgctaatgatgaatagatgttgtt 19331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 422
Target Start/End: Original strand, 19112 - 19164
Alignment:
Q  370 atcaatattatttatcgtttttgtttatgtgcagtattgtcgatgatgatttg 422  Q
    ||||||||||||||| ||| ||||||||||| || |||||  |||||||||||    
T  19112 atcaatattatttattgttgttgtttatgtgaagcattgttaatgatgatttg 19164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 394 - 485
Target Start/End: Complemental strand, 22343840 - 22343749
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatg 485  Q
    ||||||| || ||||| |||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  22343840 ttatgtgaagcattgttgatgatgatttgttgttgttttgtgttgataaattctcttacttaaattattgtttattagtattgctaatgatg 22343749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 394 - 485
Target Start/End: Complemental strand, 22355500 - 22355409
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatg 485  Q
    ||||||| || ||||| |||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  22355500 ttatgtgaagcattgttgatgatgatttgttgttgttttgtgttgataaattctcttacttaaattattgtttattagtattgctaatgatg 22355409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 394 - 498
Target Start/End: Original strand, 20518390 - 20518494
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttg 493  Q
    ||||||| || ||||| | |||||| ||| |||||||||| ||| |||||||||||||||||||||||||||||| |||| |||||||||||||| || |    
T  20518390 ttatgtgaagcattgttggtgatgaattgttgttgttttgtgttgataaattctcttacttaaattattgtttataagtattgctaatgatgaattgtcg 20518489  T
Q  494 ttgtt 498  Q
    |||||    
T  20518490 ttgtt 20518494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 359 - 488
Target Start/End: Original strand, 18820481 - 18820618
Alignment:
Q  359 caatgtgaaggatcaatattatttatcgtttttgtttatg-------tgc-agtattgtcgatgatgatttgctgttgttttgcgttaataaattctctt 450  Q
    |||||||||||||||||||||||||||||| |||||||||       ||  || ||||  |||||||||||| ||||||| || ||||||||||||||||    
T  18820481 caatgtgaaggatcaatattatttatcgttgttgtttatgctgtttatgtgagcattggtgatgatgatttgttgttgttctgtgttaataaattctctt 18820580  T
Q  451 acttaaattattgtttattagtagtgctaatgatgaat 488  Q
    |||||||||||| |||||||||  | ||||||||||||    
T  18820581 acttaaattattatttattagttttactaatgatgaat 18820618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 394 - 483
Target Start/End: Complemental strand, 5079780 - 5079691
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatga 483  Q
    ||||||| | |||||| |||||||||||||| |||||||  ||| |||||||||||||  |||||||||||||||||||| |||||||||    
T  5079780 ttatgtgaactattgttgatgatgatttgcttttgttttatgttgataaattctcttatctaaattattgtttattagtattgctaatga 5079691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 405 - 498
Target Start/End: Complemental strand, 38988111 - 38988018
Alignment:
Q  405 attgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||| ||||||||||||||||||  ||| ||| ||||||||||| ||||||||||||||||||||||  | |||||||||||| | |||||||    
T  38988111 attgttgatgatgatttgctgttgcattgtgttgataaattctctaacttaaattattgtttattagttttactaatgatgaatagatgttgtt 38988018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 405 - 498
Target Start/End: Complemental strand, 39019208 - 39019115
Alignment:
Q  405 attgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||| ||||||||||||||||||  ||| ||| ||||||||||| ||||||||||||||||||||||  | |||||||||||| | |||||||    
T  39019208 attgttgatgatgatttgctgttgcattgtgttgataaattctctaacttaaattattgtttattagttttactaatgatgaatagatgttgtt 39019115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 439 - 497
Target Start/End: Complemental strand, 12800238 - 12800180
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgt 497  Q
    |||| ||||||||||||||||| |||||||||||| |||||||||||||| | ||||||    
T  12800238 ataagttctcttacttaaattactgtttattagtattgctaatgatgaatagatgttgt 12800180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 6574450 - 6574499
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||||||||||||||||||||||||||||||||  | ||||||||||||    
T  6574450 ataaattctcttacttaaattattgtttattagttttactaatgatgaat 6574499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 439 - 487
Target Start/End: Original strand, 36406722 - 36406770
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaa 487  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||||    
T  36406722 ataaattctcttacttaaattattgtttattagttttactaatgatgaa 36406770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 488
Target Start/End: Original strand, 17979785 - 17979868
Alignment:
Q  405 attgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||| |||||||||||| |||||  ||| ||| |||||||| |||||||||||||||| |||||||   | ||||||||||||    
T  17979785 attgttgatgatgatttgttgttgcattgtgttgataaattcccttacttaaattattgcttattagctttactaatgatgaat 17979868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 468
Target Start/End: Complemental strand, 21513070 - 21513007
Alignment:
Q  405 attgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttat 468  Q
    ||||| |||||||||||| |||||  ||| ||| ||||||||||| ||||||||||||||||||    
T  21513070 attgttgatgatgatttgttgttgcattgtgttgataaattctctaacttaaattattgtttat 21513007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 498
Target Start/End: Original strand, 36733978 - 36734037
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||||||||||||||||||||||||||| ||  | |||||||||||| | |||||||    
T  36733978 ataaattctcttacttaaattattgtttattggttttactaatgatgaatagatgttgtt 36734037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 430 - 471
Target Start/End: Complemental strand, 22482608 - 22482567
Alignment:
Q  430 tttgcgttaataaattctcttacttaaattattgtttattag 471  Q
    |||| ||| |||||||||||||||||||||||||||||||||    
T  22482608 tttgtgttgataaattctcttacttaaattattgtttattag 22482567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 439 - 484
Target Start/End: Original strand, 36729229 - 36729274
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgat 484  Q
    |||| ||||||||||||||||| |||||||||||| ||||||||||    
T  36729229 ataagttctcttacttaaattactgtttattagtattgctaatgat 36729274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 498
Target Start/End: Complemental strand, 22473071 - 22473015
Alignment:
Q  442 aattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    |||||||||||||||||||||||||||||||  | |||||||| ||| | |||||||    
T  22473071 aattctcttacttaaattattgtttattagttttactaatgatcaatagatgttgtt 22473015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 498
Target Start/End: Complemental strand, 23885417 - 23885314
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttg 493  Q
    ||||||| |||||||| |||||||| || ||||||||||| |||  ||||||||| ||||| | | |||||||||||||| || | ||||  ||| ||||    
T  23885417 ttatgtgaagtattgttgatgatgaattactgttgttttgtgttgttaaattctc-tacttgactcattgtttattagtattgttgatgacaaattgttg 23885319  T
Q  494 ttgtt 498  Q
    |||||    
T  23885318 ttgtt 23885314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 498
Target Start/End: Original strand, 2718174 - 2718233
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||||||||||||||||| ||||||||||||  | | |||||||||| | |||||||    
T  2718174 ataaattctcttacttaaattgttgtttattagttttaccaatgatgaatagatgttgtt 2718233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 399
Target Start/End: Original strand, 20025488 - 20025526
Alignment:
Q  361 atgtgaaggatcaatattatttatcgtttttgtttatgt 399  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  20025488 atgtgaagtatcaatattatttattgtttttgtttatgt 20025526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 422
Target Start/End: Original strand, 36406271 - 36406332
Alignment:
Q  361 atgtgaaggatcaatattatttatcgtttttgtttatgtgcagtattgtcgatgatgatttg 422  Q
    |||||||| ||||||| ||||||| ||| ||||||||||| || |||||  |||||||||||    
T  36406271 atgtgaagtatcaatagtatttattgttgttgtttatgtgaagcattgttaatgatgatttg 36406332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 498
Target Start/End: Original strand, 22310710 - 22310814
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttg 493  Q
    ||||||| || ||||| |||||||| ||| |||||||||| |||  ||||| || |||  | |||||||| ||||||| | || ||||||||||| ||||    
T  22310710 ttatgtgaagcattgttgatgatgaattgttgttgttttgtgttgttaaatccttttaaatgaattattgcttattagcattgttaatgatgaattgttg 22310809  T
Q  494 ttgtt 498  Q
     ||||    
T  22310810 ctgtt 22310814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 498
Target Start/End: Complemental strand, 15206 - 15102
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttg 493  Q
    ||||||| | |||||| ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||| ||||||  | |||||||||||||| ||    
T  15206 ttatgtgaactattgttgatgatgatttgctgttgttttatgttgataaattctcttacttaaattattgttcattagttttactaatgatgaatcgatg 15107  T
Q  494 ttgtt 498  Q
    |||||    
T  15106 ttgtt 15102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 394 - 488
Target Start/End: Original strand, 36733125 - 36733219
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||||| | |||||| ||||||||||||||||||||||  ||| |||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  36733125 ttatgtgaactattgttgatgatgatttgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatgaat 36733219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 394 - 498
Target Start/End: Complemental strand, 45679243 - 45679139
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttg 493  Q
    ||||||| | |||||| |||||||||||| |||||||||  ||| |||||||||||||  |||||||||||||||||||| |||||||||||||| | ||    
T  45679243 ttatgtgaattattgttgatgatgatttgttgttgttttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatgaatggatg 45679144  T
Q  494 ttgtt 498  Q
    |||||    
T  45679143 ttgtt 45679139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 404 - 498
Target Start/End: Complemental strand, 22685524 - 22685430
Alignment:
Q  404 tattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    |||||| ||||||||||| ||||||||||  ||| |||||||||||||  |||||||||||||||||||| |||||||||||||| | |||||||    
T  22685524 tattgttgatgatgattttctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatgaatagatgttgtt 22685430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 394 - 498
Target Start/End: Original strand, 36737278 - 36737382
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttg 493  Q
    ||||||| | |||||| ||||||||||||||||||||||  ||| |||||||||||||  |||||||||||||||  ||| |||||||||||||| | ||    
T  36737278 ttatgtgaactattgttgatgatgatttgctgttgttttatgttgataaattctcttatctaaattattgtttataggtattgctaatgatgaatagatg 36737377  T
Q  494 ttgtt 498  Q
    |||||    
T  36737378 ttgtt 36737382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 394 - 498
Target Start/End: Original strand, 25587981 - 25588084
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttg 493  Q
    ||||||| | |||||| ||||||||||||||||||||||  ||| |||||||||||||  |||||||||| |||||| || |||||||||||||| | ||    
T  25587981 ttatgtgaactattgttgatgatgatttgctgttgttttatgttgataaattctcttatctaaattattg-ttattattattgctaatgatgaattgatg 25588079  T
Q  494 ttgtt 498  Q
    |||||    
T  25588080 ttgtt 25588084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 411 - 488
Target Start/End: Original strand, 14180829 - 14180906
Alignment:
Q  411 gatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    |||| |||||||| |||||||||||||  | |||||||||||||||| ||||||||||||||| || |||||||||||    
T  14180829 gatgttgatttgccgttgttttgcgttggtgaattctcttacttaaaatattgtttattagtattgttaatgatgaat 14180906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 439 - 497
Target Start/End: Complemental strand, 25138632 - 25138574
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgt 497  Q
    |||| ||||||||||||||||| |||||||||||| |||||||||||||| | ||||||    
T  25138632 ataagttctcttacttaaattactgtttattagtattgctaatgatgaatagatgttgt 25138574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 424 - 498
Target Start/End: Complemental strand, 44761886 - 44761812
Alignment:
Q  424 tgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    |||||||||  ||| |||||||||||||  |||||||||||||||||||| | |||||||||||| | |||||||    
T  44761886 tgttgttttatgttgataaattctcttatctaaattattgtttattagtattactaatgatgaatagatgttgtt 44761812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 498
Target Start/End: Original strand, 21317115 - 21317222
Alignment:
Q  390 ttgtttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatc 489  Q
    ||||||||| | || || || |||||||||||||||||||| || ||| |||||||||||| ||| || |||| |||||||||  | ||||||||||||     
T  21317115 ttgtttatgagaagcatcgttgatgatgatttgctgttgttctgtgttgataaattctcttgctt-aagtattatttattagttttactaatgatgaata 21317213  T
Q  490 gttgttgtt 498  Q
    | |||||||    
T  21317214 gatgttgtt 21317222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 422
Target Start/End: Original strand, 21336977 - 21337037
Alignment:
Q  362 tgtgaaggatcaatattatttatcgtttttgtttatgtgcagtattgtcgatgatgatttg 422  Q
    ||||||| ||||||||||||||| ||| ||||||||||| || ||||| ||||||||||||    
T  21336977 tgtgaagtatcaatattatttattgttgttgtttatgtgaagcattgttgatgatgatttg 21337037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 405 - 498
Target Start/End: Original strand, 1385234 - 1385327
Alignment:
Q  405 attgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||| |||||||||||| ||||| |||  ||| ||||||||||||||| ||| |||||| |||||||  | |||| ||||||| | |||||||    
T  1385234 attgttgatgatgatttgttgttgctttatgttgataaattctcttactcaaactattgtgtattagttttactaaagatgaataggtgttgtt 1385327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 498
Target Start/End: Original strand, 21337105 - 21337212
Alignment:
Q  390 ttgtttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatc 489  Q
    ||||||||| | || || || |||||||||||| ||||||| || ||| |||||||||||| ||| || |||| |||||||||  | ||||||||||||     
T  21337105 ttgtttatgagaagcatcgttgatgatgatttgatgttgttctgtgttgataaattctcttgctt-aagtattatttattagttttactaatgatgaata 21337203  T
Q  490 gttgttgtt 498  Q
    | |||||||    
T  21337204 gatgttgtt 21337212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 399
Target Start/End: Original strand, 1385181 - 1385219
Alignment:
Q  361 atgtgaaggatcaatattatttatcgtttttgtttatgt 399  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  1385181 atgtgaagtatcaatattatttatcgttgttgtttatgt 1385219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 422
Target Start/End: Original strand, 21316987 - 21317047
Alignment:
Q  362 tgtgaaggatcaatattatttatcgtttttgtttatgtgcagtattgtcgatgatgatttg 422  Q
    ||||||| |||| ||||||||||  || ||||||||||| || ||||| ||||||||||||    
T  21316987 tgtgaagtatcattattatttattattgttgtttatgtgaagcattgttgatgatgatttg 21317047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 390 - 498
Target Start/End: Original strand, 6090 - 6198
Alignment:
Q  390 ttgtttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatc 489  Q
    ||||||||||| || ||||| |||||||||||| ||||||| || ||| ||||||||||||||||||||||||||||||||||  | |||| |||||||     
T  6090 ttgtttatgtgaagcattgttgatgatgatttgttgttgttctgtgttgataaattctcttacttaaattattgtttattagttttactaaagatgaata 6189  T
Q  490 gttgttgtt 498  Q
    | |||||||    
T  6190 ggtgttgtt 6198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 390 - 470
Target Start/End: Complemental strand, 39467 - 39387
Alignment:
Q  390 ttgtttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttatta 470  Q
    ||||||||||| || ||||| |||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||    
T  39467 ttgtttatgtgaagcattgttgatgatgatttgttgttgttttgtgttgataaattctcttacttaaattattgtttatta 39387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold1256
Description:

Target: scaffold1256; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 391 - 498
Target Start/End: Original strand, 784 - 891
Alignment:
Q  391 tgtttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcg 490  Q
    |||||||||| || ||||| |||||||||||||||||| |||  ||| ||||||||||||||||||||||||||||||||||  | |||| ||||||| |    
T  784 tgtttatgtgaagcattgttgatgatgatttgctgttgctttatgttgataaattctcttacttaaattattgtttattagttttactaaagatgaatag 883  T
Q  491 ttgttgtt 498  Q
     |||||||    
T  884 gtgttgtt 891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 422
Target Start/End: Original strand, 554 - 615
Alignment:
Q  361 atgtgaaggatcaatattatttatcgtttttgtttatgtgcagtattgtcgatgatgatttg 422  Q
    |||||||| |||||||||||||||  || ||||||||||| || |||||  |||||||||||    
T  554 atgtgaagtatcaatattatttattattgttgtttatgtgaagcattgttaatgatgatttg 615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 394 - 488
Target Start/End: Complemental strand, 64881 - 64787
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||||| | |||||| |||||||||||||||||||| |  ||| |||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  64881 ttatgtgaactattgttgatgatgatttgctgttgttgtatgttgataaattctcttatctaaattattgtttattagtattgctaatgatgaat 64787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 394 - 488
Target Start/End: Complemental strand, 74331 - 74237
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||||| | |||||| ||||||||||||||||||||||  ||| | ||| |||||||  |||||||||||||||||||| ||||||||||||||    
T  74331 ttatgtgaactattgttgatgatgatttgctgttgttttatgttgacaaaatctcttatctaaattattgtttattagtattgctaatgatgaat 74237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 394 - 483
Target Start/End: Original strand, 67481 - 67571
Alignment:
Q  394 ttatgtgcagtattgtcgatga-tgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatga 483  Q
    ||||||| | |||||| ||||| ||| ||||||| |||||  ||| |||||||||||||  |||||||||||||||||||| |||||||||    
T  67481 ttatgtgaactattgttgatgaatgagttgctgtagttttatgttgataaattctcttatctaaattattgtttattagtattgctaatga 67571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 405 - 498
Target Start/End: Complemental strand, 6832983 - 6832890
Alignment:
Q  405 attgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||| ||||||||||||||||||||||  ||| |||||| ||||||  |||||||||||||||||||| |||||||||||||| | |||||||    
T  6832983 attgttgatgatgatttgctgttgttttatgttgataaatcctcttatctaaattattgtttattagtattgctaatgatgaatagatgttgtt 6832890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 404 - 498
Target Start/End: Original strand, 21350679 - 21350773
Alignment:
Q  404 tattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    |||||| ||||||||||||||||||||||  ||| |||||| ||||||  ||||||||||||||||| || |||||||||||||| | |||||||    
T  21350679 tattgttgatgatgatttgctgttgttttatgttgataaatcctcttatctaaattattgtttattaatattgctaatgatgaatagatgttgtt 21350773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 390 - 498
Target Start/End: Original strand, 17904459 - 17904567
Alignment:
Q  390 ttgtttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatc 489  Q
    ||||||||||| || ||||| |||||||||||| || |||| || ||| ||||||||||| ||||||||||||||||||||||  | |||| |||||||     
T  17904459 ttgtttatgtgaagcattgttgatgatgatttgttgatgttctgtgttgataaattctctaacttaaattattgtttattagttttactaaagatgaata 17904558  T
Q  490 gttgttgtt 498  Q
    | |||||||    
T  17904559 ggtgttgtt 17904567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 405 - 498
Target Start/End: Original strand, 28478044 - 28478137
Alignment:
Q  405 attgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||| |||||||||||| |||||  ||| ||| ||||||||||| ||||||||||||||||||||||  | |||||||||||| | |||||||    
T  28478044 attgttgatgatgatttgttgttgcattgtgttgataaattctctaacttaaattattgtttattagttttactaatgatgaatagatgttgtt 28478137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 405 - 488
Target Start/End: Complemental strand, 18120326 - 18120243
Alignment:
Q  405 attgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||| |||||||||||| |||||  ||| ||| ||||||||||| ||||||||||||||||||||||  | ||||||||||||    
T  18120326 attgttgatgatgatttgttgttgcattgtgttgataaattctctaacttaaattattgtttattagttttactaatgatgaat 18120243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 411 - 488
Target Start/End: Complemental strand, 12709768 - 12709691
Alignment:
Q  411 gatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||||||||||| ||||||||| |||  | |||||| ||||||||||| ||||||||||||| || |||||||||||    
T  12709768 gatgatgatttgcagttgttttgtgttggtgaattctgttacttaaattcttgtttattagtattgttaatgatgaat 12709691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 439 - 488
Target Start/End: Complemental strand, 44891190 - 44891141
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  44891190 ataaattctcttacttaaattactgtttattagtattgctaatgatgaat 44891141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 498
Target Start/End: Original strand, 24721227 - 24721286
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||||| | |||||||    
T  24721227 ataaattctcttacttaaattattgtttattagttttactaatgatgaatagatgttgtt 24721286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 488
Target Start/End: Complemental strand, 12709433 - 12709356
Alignment:
Q  411 gatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||||||||||| ||||||||| | |  | |||| | ||||||||||||||||||||||||| || |||||||||||    
T  12709433 gatgatgatttgccgttgttttgtgctggtgaattatgttacttaaattattgtttattagtattgttaatgatgaat 12709356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 488
Target Start/End: Complemental strand, 39052151 - 39052067
Alignment:
Q  404 tattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    |||||| ||||||||||| ||| |||| |  ||| |||||||||||||  |||||||||||||||||||| || | |||||||||    
T  39052151 tattgttgatgatgattttctgctgttatatgttgataaattctcttatctaaattattgtttattagtattgttgatgatgaat 39052067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 488
Target Start/End: Complemental strand, 12713036 - 12712997
Alignment:
Q  449 ttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  12713036 ttacttaaattattgtttattagtattgttaatgatgaat 12712997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 422
Target Start/End: Complemental strand, 44891324 - 44891263
Alignment:
Q  361 atgtgaaggatcaatattatttatcgtttttgtttatgtgcagtattgtcgatgatgatttg 422  Q
    |||||||| ||||||||||||||| ||| ||||||||||| |  |||||  |||||||||||    
T  44891324 atgtgaagtatcaatattatttattgttgttgtttatgtggaccattgttaatgatgatttg 44891263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 361 - 498
Target Start/End: Original strand, 9744512 - 9744659
Alignment:
Q  361 atgtgaaggatcaatattatttatcgtttttgtttatgt---------gcagtattgtcgatgatgattt-gctgttgttttgcgttaataaattctctt 450  Q
    |||||||||||||||||||||||||||| ||||||||||         | || ||||| ||||||||||| | ||||||| || ||| ||||||||||||    
T  9744512 atgtgaaggatcaatattatttatcgttgttgtttatgttgtttatgtgaagcattgttgatgatgattttgttgttgttctgtgttgataaattctctt 9744611  T
Q  451 acttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||||||||||||||||||  | |||| ||||||| | |||||||    
T  9744612 acttaaattattgtttattagttttactaaagatgaataggtgttgtt 9744659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 405 - 498
Target Start/End: Original strand, 4692020 - 4692113
Alignment:
Q  405 attgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||| ||||||||||||||||||  ||| ||| ||||||||||| ||||||||||||||||||||||  | |||||||||||| | |||||||    
T  4692020 attgttgatgatgatttgctgttgcattgtgttgataaattctctaacttaaattattgtttattagttttactaatgatgaatagatgttgtt 4692113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 405 - 470
Target Start/End: Complemental strand, 9255797 - 9255732
Alignment:
Q  405 attgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttatta 470  Q
    ||||| |||||||||||| |||||||||| ||| ||||||| ||||||||||||||||||||||||    
T  9255797 attgttgatgatgatttgttgttgttttgtgttgataaattttcttacttaaattattgtttatta 9255732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 405 - 470
Target Start/End: Original strand, 9314453 - 9314518
Alignment:
Q  405 attgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttatta 470  Q
    ||||| |||||||||||| |||||||||| ||| ||||||| ||||||||||||||||||||||||    
T  9314453 attgttgatgatgatttgttgttgttttgtgttgataaattttcttacttaaattattgtttatta 9314518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 402 - 498
Target Start/End: Original strand, 11314465 - 11314561
Alignment:
Q  402 agtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||||  ||||||| ||| |||| ||||  ||| |||||||||||||  |||||||||||||||||||| |||||||||||||| | |||||||    
T  11314465 agtattgttaatgatgaattgatgttattttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatgaatagatgttgtt 11314561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 498
Target Start/End: Original strand, 48217919 - 48218027
Alignment:
Q  390 ttgtttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatc 489  Q
    ||||||||||| || ||||| | |||||||||| ||||||| |  ||| |||||||||||| |||||||||||||||||||||  | |||| |||||||     
T  48217919 ttgtttatgtgaagcattgttgttgatgatttgttgttgttctatgttgataaattctcttccttaaattattgtttattagttttactaaagatgaata 48218018  T
Q  490 gttgttgtt 498  Q
    | |||||||    
T  48218019 ggtgttgtt 48218027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 411 - 488
Target Start/End: Original strand, 11314406 - 11314483
Alignment:
Q  411 gatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||||||||||| ||||||||| |||  | |||||||||||||||| |||| |||||||||| || |||||||||||    
T  11314406 gatgatgatttgccgttgttttgtgttgctgaattctcttacttaaactattatttattagtattgttaatgatgaat 11314483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 498
Target Start/End: Original strand, 15577365 - 15577424
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||||| | |||||||    
T  15577365 ataaattctcttacttaaattattgtttattagttttactaatgatgaatagatgttgtt 15577424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 405 - 487
Target Start/End: Complemental strand, 43747225 - 43747143
Alignment:
Q  405 attgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaa 487  Q
    ||||| |||||||||||| |||||  ||| ||| ||||||| ||| ||||||||||||||||||||||  | |||||||||||    
T  43747225 attgttgatgatgatttgttgttgcattgtgttgataaattttctaacttaaattattgtttattagttttactaatgatgaa 43747143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 498
Target Start/End: Complemental strand, 9255840 - 9255772
Alignment:
Q  430 tttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    |||| ||| ||||||||||||||||||||||||||||||||| | || | ||||||| | |||||||||    
T  9255840 tttgtgttgataaattctcttacttaaattattgtttattagcattgttgatgatgatttgttgttgtt 9255772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 498
Target Start/End: Original strand, 9314410 - 9314478
Alignment:
Q  430 tttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    |||| ||| ||||||||||||||||||||||||||||||||| | || | ||||||| | |||||||||    
T  9314410 tttgtgttgataaattctcttacttaaattattgtttattagcattgttgatgatgatttgttgttgtt 9314478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 439 - 487
Target Start/End: Original strand, 13134363 - 13134411
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaa 487  Q
    |||| ||||||||||||||||| |||||||||||| |||||||||||||    
T  13134363 ataagttctcttacttaaattactgtttattagtaatgctaatgatgaa 13134411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 498
Target Start/End: Complemental strand, 37538139 - 37538036
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttg 493  Q
    ||||||| |||||||| |||||||| || || ||||||||||||  ||||||||| ||||| | | |||||||||||||| || | ||||| ||| ||||    
T  37538139 ttatgtgaagtattgttgatgatgaattactattgttttgcgttgttaaattctc-tacttgactcattgtttattagtattgttgatgataaattgttg 37538041  T
Q  494 ttgtt 498  Q
    |||||    
T  37538040 ttgtt 37538036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 488
Target Start/End: Original strand, 33557360 - 33557454
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||||| || ||||  |||||||| |||| ||||||| | |||| ||||||||||  | ||||||||| |||||||||| || |||||||||||    
T  33557360 ttatgtgaagcattgctgatgatgaattgccgttgtttcgagttattaaattctctcccataaattattatttattagtattgttaatgatgaat 33557454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 465
Target Start/End: Original strand, 14154347 - 14154407
Alignment:
Q  405 attgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtt 465  Q
    ||||| ||||||||||| ||| ||  ||| ||| |||||||||||||||||||||||||||    
T  14154347 attgttgatgatgattttctgatgcattgtgttgataaattctcttacttaaattattgtt 14154407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 498
Target Start/End: Complemental strand, 25941134 - 25941030
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttg 493  Q
    ||||||| || ||||| |||||||| || ||||||||||| |||  |||||| |||||||| | |  ||||||||||||| || | ||||| ||| ||||    
T  25941134 ttatgtgaagcattgttgatgatgaattactgttgttttgtgttgttaaattttcttacttgactcgttgtttattagtattgttgatgataaattgttg 25941035  T
Q  494 ttgtt 498  Q
    |||||    
T  25941034 ttgtt 25941030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 473
Target Start/End: Original strand, 36301903 - 36301982
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagta 473  Q
    ||||||| |||||||| |||||||| || ||||||||||  |||  ||||||||||||||| | | ||| ||||||||||    
T  36301903 ttatgtgaagtattgttgatgatgaattactgttgttttatgttgttaaattctcttacttgactcattatttattagta 36301982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 498
Target Start/End: Original strand, 18985613 - 18985699
Alignment:
Q  412 atgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||| |||||||||||||| |||  ||||||||  ||| | |||||||| ||||||| | || ||||||||||| |||| ||||    
T  18985613 atgatgaattgctgttgttttgtgttggtaaattcttctacatgaattattgcttattagcattgttaatgatgaattgttgctgtt 18985699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 498
Target Start/End: Original strand, 19000241 - 19000327
Alignment:
Q  412 atgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||| |||||||||||||| |||  ||||||||  ||| | |||||||| ||||||| | || ||||||||||| |||| ||||    
T  19000241 atgatgaattgctgttgttttgtgttggtaaattcttctacatgaattattgcttattagcattgttaatgatgaattgttgctgtt 19000327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 422
Target Start/End: Original strand, 9744421 - 9744482
Alignment:
Q  361 atgtgaaggatcaatattatttatcgtttttgtttatgtgcagtattgtcgatgatgatttg 422  Q
    |||||||| ||||||||||||||| ||| ||||||||||| || ||||   |||||||||||    
T  9744421 atgtgaagtatcaatattatttattgttgttgtttatgtgaagcattgctaatgatgatttg 9744482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 498
Target Start/End: Complemental strand, 38294218 - 38294114
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttg 493  Q
    ||||||| |||||||| ||||| || || | ||||||||| |||  |||||| |||||||| | | |||||||||||||| || | ||| | ||| ||||    
T  38294218 ttatgtgaagtattgttgatgaagaattaccgttgttttgtgttgttaaattatcttacttgactcattgtttattagtaatgttgatggtaaattgttg 38294119  T
Q  494 ttgtt 498  Q
    |||||    
T  38294118 ttgtt 38294114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 361 - 498
Target Start/End: Original strand, 8285 - 8431
Alignment:
Q  361 atgtgaaggatcaatattatttatcgttttt---------gtttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctctta 451  Q
    |||||||||||||||||||||||||||| ||         ||||||||| |  ||||| ||||||||||||||||||||||  ||| |||||| ||||||    
T  8285 atgtgaaggatcaatattatttatcgttgttatttatgttgtttatgtgaaacattgttgatgatgatttgctgttgttttatgttgataaatcctctta 8384  T
Q  452 cttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
      ||||||| |||||||||||| ||||||| |||||| | |||||||    
T  8385 tctaaattaatgtttattagtattgctaataatgaatagatgttgtt 8431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 361 - 498
Target Start/End: Complemental strand, 61453 - 61307
Alignment:
Q  361 atgtgaaggatcaatattatttatcgtttttgt---------ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctctta 451  Q
    |||||||||||||||||||||||||||| ||||         ||||||| || ||||| |||||||||||| |||||||  | ||| |||||||||||||    
T  61453 atgtgaaggatcaatattatttatcgttgttgtatatgttgtttatgtgaagcattgttgatgatgatttgttgttgttcagtgttgataaattctctta 61354  T
Q  452 cttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
     ||||||||||||||||||||  | |||| ||||||| | |||||||    
T  61353 tttaaattattgtttattagttttactaaagatgaataggtgttgtt 61307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 361 - 422
Target Start/End: Complemental strand, 61544 - 61483
Alignment:
Q  361 atgtgaaggatcaatattatttatcgtttttgtttatgtgcagtattgtcgatgatgatttg 422  Q
    |||||||| ||||||||||||||| ||| ||||||||||| || |||||  |||||||||||    
T  61544 atgtgaagtatcaatattatttattgttgttgtttatgtgaagcattgttaatgatgatttg 61483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 362 - 498
Target Start/End: Original strand, 4913 - 5058
Alignment:
Q  362 tgtgaaggatcaatattatttatcgtttttgtttatgt---------gcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttac 452  Q
    ||||||||||||||||||||||| ||| ||||||||||         | || ||||| |||||||||||| ||||||| || ||| |||||||||||||     
T  4913 tgtgaaggatcaatattatttatagttgttgtttatgttgtttatttgaagcattgttgatgatgatttgttgttgttctgtgttgataaattctcttaa 5012  T
Q  453 ttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||||||||||||||||  | |||| ||||||| | |||||||    
T  5013 ttaaattattgtttattagtgttactaaagatgaataggtgttgtt 5058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 394 - 498
Target Start/End: Original strand, 8121 - 8225
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttg 493  Q
    ||||||| | |||||| |||||||||||| |||||||||  ||| |||||||||||||  |||||||||||||||||| | | |||||||||||| | ||    
T  8121 ttatgtgaactattgttgatgatgatttgttgttgttttatgttgataaattctcttatctaaattattgtttattagcattcctaatgatgaatagatg 8220  T
Q  494 ttgtt 498  Q
    |||||    
T  8221 ttgtt 8225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 394 - 498
Target Start/End: Complemental strand, 3752 - 3648
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttg 493  Q
    ||||||| | ||||||  |||||||||||||||||||||   || |||||||||||||  |||||||| ||||||||||| |||||||||||||| | ||    
T  3752 ttatgtgaactattgttaatgatgatttgctgttgttttatattgataaattctcttatataaattatagtttattagtattgctaatgatgaatagatg 3653  T
Q  494 ttgtt 498  Q
    |||||    
T  3652 ttgtt 3648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 394 - 498
Target Start/End: Complemental strand, 9874 - 9770
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttg 493  Q
    ||||||| | ||||||  |||||||||||||||||||||   || |||||||||||||  |||||||| ||||||||||| |||||||||||||| | ||    
T  9874 ttatgtgaactattgttaatgatgatttgctgttgttttatattgataaattctcttatataaattatagtttattagtattgctaatgatgaatagatg 9775  T
Q  494 ttgtt 498  Q
    |||||    
T  9774 ttgtt 9770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 406 - 498
Target Start/End: Complemental strand, 14838 - 14746
Alignment:
Q  406 ttgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    |||| |||||||||||  |||||||||  ||| |||||||||||||  |||||||||||||||||||| |||||||||||||| | |||||||    
T  14838 ttgttgatgatgattttttgttgttttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatgaatagatgttgtt 14746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 394 - 498
Target Start/End: Complemental strand, 9350 - 9245
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaatta-ttgtttattagtagtgctaatgatgaatcgtt 492  Q
    ||||||| | |||||| ||||||||||| || |||||||  ||| |||||||||||||  ||||||| ||||||||||||| |||||||||||||| | |    
T  9350 ttatgtgaactattgttgatgatgattttcttttgttttatgttgataaattctcttatctaaattatttgtttattagtattgctaatgatgaatagat 9251  T
Q  493 gttgtt 498  Q
    ||||||    
T  9250 gttgtt 9245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 394 - 498
Target Start/End: Complemental strand, 16542 - 16437
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaatta-ttgtttattagtagtgctaatgatgaatcgtt 492  Q
    ||||||| | |||||| ||||||||||| || |||||||  ||| |||||||||||||  ||||||| ||||||||||||| |||||||||||||| | |    
T  16542 ttatgtgaactattgttgatgatgattttcttttgttttatgttgataaattctcttatctaaattatttgtttattagtattgctaatgatgaatagat 16443  T
Q  493 gttgtt 498  Q
    ||||||    
T  16442 gttgtt 16437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 405 - 488
Target Start/End: Complemental strand, 15650 - 15567
Alignment:
Q  405 attgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||| |||||||||||||||||   ||| ||| |||||||||||||| |||||||||||||||||||  | ||||||||||||    
T  15650 attgttgatgatgatttgctgttacattgtgttgataaattctcttacataaattattgtttattagttttactaatgatgaat 15567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 411 - 488
Target Start/End: Complemental strand, 24382 - 24306
Alignment:
Q  411 gatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    |||||||||||| ||||||||   ||| |||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  24382 gatgatgatttgttgttgtttat-gttgataaattctcttatctaaattattgtttattagtattgctaatgatgaat 24306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 498
Target Start/End: Complemental strand, 18939 - 18880
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||||| | |||||||    
T  18939 ataaattctcttacttaaattattgtttattagttttactaatgatgaatagatgttgtt 18880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 394 - 488
Target Start/End: Original strand, 8508 - 8602
Alignment:
Q  394 ttatgtgcagtattgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    ||||||| || ||||| |||||||| |||  ||||||| | |||  |||||||||| || |||||||||||||||||||| || |||||||||||    
T  8508 ttatgtgaagcattgttgatgatgaattgtcgttgtttcgagttgttaaattctctcacataaattattgtttattagtattgttaatgatgaat 8602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 445 - 497
Target Start/End: Original strand, 188367 - 188419
Alignment:
Q  445 tctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgt 497  Q
    |||||||||||||||| |||||||||||| |||||||||||||| | ||||||    
T  188367 tctcttacttaaattactgtttattagtattgctaatgatgaatagatgttgt 188419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 498
Target Start/End: Complemental strand, 3517 - 3458
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||||||||||||||||||||||||||||||||  | ||||||||| || | |||||||    
T  3517 ataaattctcttacttaaattattgtttattagttttactaatgatggatagatgttgtt 3458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 498
Target Start/End: Complemental strand, 17818 - 17759
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    |||||||||||||||||||||| |||||||||||  | |||||||||||| | |||||||    
T  17818 ataaattctcttacttaaattagtgtttattagttttactaatgatgaatagatgttgtt 17759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0645 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0645
Description:

Target: scaffold0645; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 497
Target Start/End: Original strand, 933 - 991
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgt 497  Q
    |||| ||||||||||||||||| | |||||| ||| |||||||||||||| ||||||||    
T  933 ataagttctcttacttaaattactatttatttgtattgctaatgatgaatagttgttgt 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 444 - 497
Target Start/End: Complemental strand, 33502 - 33449
Alignment:
Q  444 ttctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgt 497  Q
    ||||||||||||||||| | |||||||||| |||||||||||||| | ||||||    
T  33502 ttctcttacttaaattactctttattagtattgctaatgatgaatagatgttgt 33449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1716 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1716
Description:

Target: scaffold1716; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 1425 - 1377
Alignment:
Q  440 taaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    |||||||||| || |||||||||||||||||||| || |||||||||||    
T  1425 taaattctctcacataaattattgtttattagtattgttaatgatgaat 1377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 6854 - 6902
Alignment:
Q  440 taaattctcttacttaaattattgtttattagtagtgctaatgatgaat 488  Q
    |||||||||| || |||||||||||||||||||| || |||||||||||    
T  6854 taaattctctcacataaattattgtttattagtattgttaatgatgaat 6902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 498
Target Start/End: Complemental strand, 25236 - 25177
Alignment:
Q  439 ataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    |||||||||||||||||| ||| |||||||||||  | |||||||||||| | |||||||    
T  25236 ataaattctcttacttaagttactgtttattagttttactaatgatgaatagatgttgtt 25177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0742 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0742
Description:

Target: scaffold0742; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 498
Target Start/End: Complemental strand, 2749 - 2656
Alignment:
Q  405 attgtcgatgatgatttgctgttgttttgcgttaataaattctcttacttaaattattgtttattagtagtgctaatgatgaatcgttgttgtt 498  Q
    ||||| |||||||||||| |||||  ||| ||| |||||||  |||||||||||| ||| |||||||   | |||||||||||| | |||||||    
T  2749 attgttgatgatgatttgttgttgcattgtgttgataaatttccttacttaaattgttgcttattagctttactaatgatgaatagatgttgtt 2656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University