View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8755_low_8 (Length: 494)
Name: NF8755_low_8
Description: NF8755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8755_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 2e-69; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 104 - 335
Target Start/End: Original strand, 26424133 - 26424365
Alignment:
| Q |
104 |
tatcattatttggtaagcttctcggaaagaaaaagttacaaataaaattaagtttatttaaatataccttttatttaattatcccatttagaatataatt |
203 |
Q |
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| T |
26424133 |
tatcattatttggtaagcttctaagaaagaaaaagttacgaataaaattaagtttatttaaatatacct----tttacttatcccatttacaatataatt |
26424228 |
T |
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| Q |
204 |
catttaagtaagatctccaaatttgagctttgtaaatggaaaaa------taatacccaacagaagttagtcatcaacaaaatgggtggatatattacac |
297 |
Q |
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| T |
26424229 |
catttaagtaagatatccaaatttgagctttttaaatggaaaaataatactaatacctagcagaagttagtcatcaacaaaatgggtggatatctt-cgc |
26424327 |
T |
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| Q |
298 |
caataatacaattaacaaaaactattcctcatttaacc |
335 |
Q |
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| T |
26424328 |
caataatacgatcaacaaaaattattcctcatttaacc |
26424365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 245 - 456
Target Start/End: Original strand, 26425580 - 26425790
Alignment:
| Q |
245 |
aaataatacccaacagaagttagtcatcaacaaaatgggtggatatattacaccaataatacaattaacaaaaactattcctcatttaaccgtnnnnnnn |
344 |
Q |
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| T |
26425580 |
aaataatacccaacagaagtaagtcatcaacaaaatgagtggatatattacaccaataatacaattaacaaaaactattcctcatttaaccgtaaaaaat |
26425679 |
T |
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| Q |
345 |
nnnnnnnnnnnnnntcctcattttctacttggctattgtcacggattgtgtcacaaggaatgtaatataatcacatgagccatatgatttaggg-tggac |
443 |
Q |
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| T |
26425680 |
aagaaaaaaaaa--tcctcattttctacttggctattgtcacggattgtgtcacaaggaatgtaatataatcacatgagccatatgatttagggatggac |
26425777 |
T |
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| Q |
444 |
aaatttttataag |
456 |
Q |
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| T |
26425778 |
aaatttttataag |
26425790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 26425470 - 26425555
Alignment:
| Q |
19 |
ccacaacctcaagatttctcagctgaagcattggacaaagagcttccacccacagaagcctaaat---tagtccttttggcttttt |
101 |
Q |
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| T |
26425470 |
ccacaacctcaagatttctcagctgaagcattggacaaagagcttccacccactgaagcctaaattagtagtccttttggcttttt |
26425555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 26423882 - 26423953
Alignment:
| Q |
29 |
aagatttctcagctgaagcattggacaaagagcttccacccacagaagcctaaattagtccttttggcttttt |
101 |
Q |
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| T |
26423882 |
aagatttctcagtcgaagcattggacaaagagtttctatccatagaagcctaaa-tagtccttttgacttttt |
26423953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 177 - 253
Target Start/End: Original strand, 12296990 - 12297068
Alignment:
| Q |
177 |
tttaattatcccatttaga--atataattcatttaagtaagatctccaaatttgagctttgtaaatggaaaaataatac |
253 |
Q |
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| T |
12296990 |
tttacttatcccatttacacaatataattcatttaagcaagatctccaattttgagctttgtaaatggaaaaataatac |
12297068 |
T |
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