View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8755_low_9 (Length: 488)

Name: NF8755_low_9
Description: NF8755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8755_low_9
NF8755_low_9
[»] chr3 (10 HSPs)
chr3 (18-296)||(7420125-7420408)
chr3 (18-292)||(19586437-19586718)
chr3 (25-289)||(12285580-12285851)
chr3 (287-488)||(9766451-9766656)
chr3 (356-428)||(46125456-46125528)
chr3 (370-425)||(21973503-21973558)
chr3 (370-425)||(21995934-21995989)
chr3 (287-323)||(21973609-21973645)
chr3 (287-323)||(21996040-21996076)
chr3 (356-425)||(22156607-22156678)
[»] chr1 (2 HSPs)
chr1 (25-292)||(52777960-52778234)
chr1 (183-296)||(2360008-2360121)
[»] scaffold0329 (1 HSPs)
scaffold0329 (25-292)||(11289-11563)
[»] chr4 (11 HSPs)
chr4 (25-292)||(22176668-22176942)
chr4 (179-268)||(23167198-23167287)
chr4 (192-274)||(22643807-22643889)
chr4 (183-244)||(17130012-17130073)
chr4 (183-296)||(5239791-5239904)
chr4 (186-286)||(5119571-5119670)
chr4 (356-425)||(39481261-39481332)
chr4 (183-296)||(10653188-10653301)
chr4 (183-296)||(10867333-10867446)
chr4 (189-253)||(8122971-8123035)
chr4 (287-323)||(39481365-39481401)
[»] chr8 (1 HSPs)
chr8 (287-488)||(43650859-43651059)
[»] chr5 (7 HSPs)
chr5 (344-488)||(21114061-21114205)
chr5 (287-331)||(21114224-21114268)
chr5 (183-280)||(16990592-16990689)
chr5 (75-146)||(20323926-20323998)
chr5 (287-330)||(38929791-38929834)
chr5 (183-286)||(15449145-15449248)
chr5 (183-225)||(11924710-11924752)
[»] chr2 (5 HSPs)
chr2 (115-288)||(29499740-29499913)
chr2 (186-280)||(20483427-20483521)
chr2 (392-428)||(24863331-24863367)
chr2 (449-488)||(24863286-24863325)
chr2 (186-280)||(28017663-28017757)
[»] scaffold0669 (1 HSPs)
scaffold0669 (76-295)||(250-470)
[»] scaffold0039 (1 HSPs)
scaffold0039 (356-428)||(82252-82324)
[»] chr6 (3 HSPs)
chr6 (356-428)||(19381543-19381615)
chr6 (183-296)||(14815249-14815362)
chr6 (186-280)||(6342634-6342728)
[»] chr7 (2 HSPs)
chr7 (287-330)||(3572868-3572911)
chr7 (356-425)||(9331519-9331590)
[»] scaffold1416 (1 HSPs)
scaffold1416 (186-280)||(1003-1097)


Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 7420125 - 7420408
Alignment:
Q  18 acacatcctcaatgtaaatagagctttattatttcaatccaaactcccaccttcttttt------atgctattcttcatgctatgtttctaatcaaagag 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||    
T  7420125 acacatcctcaatgtaaatagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctatgtttctaatcaaagag 7420224  T
Q  112 tttctactcctgttcttcataaccagtcaccttattttgtcttgcataacaagttacctgctctcaatttgttcaaagtgtttggttgcttgtgttatgc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7420225 tttctactcctgttcttcataaccagtcaccttattttgtcttgcataacaagttacctgctctcaatttgttcaaagtgtttggttgcttgtgttatgc 7420324  T
Q  212 ctctactcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttaggctacaaatcaggttttaagggt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7420325 ctctactcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttaggctac-aatcaggttttaagggt 7420408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 19586718 - 19586437
Alignment:
Q  18 acacatcctcaatgtaaatagagctttattatttcaatccaaactcccaccttcttttt------atgctattcttcatgctatgtttctaatcaa-aga 110  Q
    |||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||      ||||||||||||||| | |||| |||||||| |||    
T  19586718 acacattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgttgtgttcctaatcaacaga 19586619  T
Q  111 gtttctactcctgttcttcataaccagtcaccttattttgtcttgcataacaagttacctgctctcaatttgttcaaagtgtttggttgcttgtgttatg 210  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||    
T  19586618 gttcctactcctattcttcataaccagtcaccttattttgtcttgcatcaccagttacctgctctcaatttgtttaaagtgtttggttgcttgtgttatg 19586519  T
Q  211 cctctactcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttaggctacaaatcaggttttaa 292  Q
    | |||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||||||    
T  19586518 cttctactcttcaatctcacagaacaaaattgcaacttagagctcgtaaatctattttcttaggttacaaatcaggttttaa 19586437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 25 - 289
Target Start/End: Original strand, 12285580 - 12285851
Alignment:
Q  25 ctcaatgtaaatagagctttattatttcaatccaaactcccaccttcttttt------atgctattcttcatgctatgtttctaatcaa-agagtttcta 117  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||| |||| |||||||| |||||| |||    
T  12285580 ctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctgtgttcctaatcaacagagttccta 12285679  T
Q  118 ctcctgttcttcataaccagtcaccttattttgtcttgcataacaagttacctgctctcaatttgttcaaagtgtttggttgcttgtgttatgcctctac 217  Q
    ||||| |||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||| | |||||||||||| ||||||||||| |||||    
T  12285680 ctcctattcttcataatcagtcaccttattttgtcttgcatcaccagttacctgctctcaatttgtttacagtgtttggttgtttgtgttatgcttctac 12285779  T
Q  218 tcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttaggctacaaatcaggttt 289  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||    
T  12285780 tcttcaatctcacagaacaaaattgcaacctagagctcgtaaatctatttttttaggttacaaatcaggttt 12285851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 287 - 488
Target Start/End: Original strand, 9766451 - 9766656
Alignment:
Q  287 ttttaagggtgattctactatctatctatgtggttctacttatagnnnnnnnnnnn----ggtgattatactcttaatagaaagtatcccaatcaaatac 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||    
T  9766451 ttttaagggtgattctactatctatctatgtggttctacttatagtttttttttttttttggtgattatactcttaatagaaagtatcccaatcaaatac 9766550  T
Q  383 ccaatttgctattcaaaaatgatggcacaaaactcaaatctcttatatcaaatagtatgatttacattcaagagtggttgcattgatgaagtggactcca 482  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9766551 ccaatttactattcaaaaatgatggcacaaaactcaaatctcttatatcaaatagtatgatttacattcaagagtggttgcgttgatgaagtggactcca 9766650  T
Q  483 ccattt 488  Q
    ||||||    
T  9766651 ccattt 9766656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 356 - 428
Target Start/End: Complemental strand, 46125528 - 46125456
Alignment:
Q  356 ttaatagaaagtatcccaatcaaatacccaatttgctattcaaaaatgatggcacaaaactcaaatctcttat 428  Q
    |||| ||||||||||||||| |||||||  ||    |||||||||||||||||||||||||||||||||||||    
T  46125528 ttaagagaaagtatcccaataaaataccacatcctttattcaaaaatgatggcacaaaactcaaatctcttat 46125456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 425
Target Start/End: Complemental strand, 21973558 - 21973503
Alignment:
Q  370 cccaatcaaatacccaatttgctattcaaaaatgatggcacaaaactcaaatctct 425  Q
    |||||| |||||||| || || ||||||||||||||| ||||||||||| ||||||    
T  21973558 cccaataaaataccccatctgttattcaaaaatgatgacacaaaactcagatctct 21973503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 425
Target Start/End: Complemental strand, 21995989 - 21995934
Alignment:
Q  370 cccaatcaaatacccaatttgctattcaaaaatgatggcacaaaactcaaatctct 425  Q
    |||||| |||||||| || || ||||||||||||||| ||||||||||| ||||||    
T  21995989 cccaataaaataccccatctgttattcaaaaatgatgacacaaaactcagatctct 21995934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 21973645 - 21973609
Alignment:
Q  287 ttttaagggtgattctactatctatctatgtggttct 323  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  21973645 ttttaagggtgattctactatgtatctatgtgattct 21973609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 21996076 - 21996040
Alignment:
Q  287 ttttaagggtgattctactatctatctatgtggttct 323  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  21996076 ttttaagggtgattctactatgtatctatgtgattct 21996040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 22156678 - 22156607
Alignment:
Q  356 ttaatagaaagtatccc--aatcaaatacccaatttgctattcaaaaatgatggcacaaaactcaaatctct 425  Q
    |||| ||||||||||||  ||| |||||||| || || ||||||||||||||| || |||||||| ||||||    
T  22156678 ttaagagaaagtatcccccaataaaataccccatctgttattcaaaaatgatgacataaaactcagatctct 22156607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 25 - 292
Target Start/End: Original strand, 52777960 - 52778234
Alignment:
Q  25 ctcaatgtaaatagagctttattatttcaatccaaactcccaccttcttttt------atgctattcttcatgctatgtttctaatcaa-agagtttcta 117  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||| |||| |||||||| |||||| |||    
T  52777960 ctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctgtgttcctaatcaacagagttccta 52778059  T
Q  118 ctcctgttcttcataaccagtcaccttattttgtcttgcataacaagttacctgctctcaatttgttcaaagtgtttggttgcttgtgttatgcctctac 217  Q
    ||||| |||||||||| |||||||||||||||||||| ||| || |||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  52778060 ctcctattcttcataatcagtcaccttattttgtcttacatcaccagttacctgctctcaatttgtttaaagtgtttggttgcttgtgttatgcttctac 52778159  T
Q  218 tcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttaggctacaaatcaggttttaa 292  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||    
T  52778160 tcttcaatctcacagaacaaaattgcaacctagagctcgtaaatctatttttttaggttacaaatcaggttttaa 52778234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 296
Target Start/End: Original strand, 2360008 - 2360121
Alignment:
Q  183 ttcaaagtgtttggttgcttgtgttatgcctctactcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttaggctacaaat 282  Q
    |||||||| |||||||| || |||||||| || ||| | || ||||| ||||| ||| |||||||||||||| |||| ||  | |||||||| ||||| |    
T  2360008 ttcaaagtttttggttgtttatgttatgcttccactttacattctcatagaaccaaactgcaacctagagctagaaagtctttattcttaggttacaagt 2360107  T
Q  283 caggttttaagggt 296  Q
    | |||| |||||||    
T  2360108 ctggttataagggt 2360121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 25 - 292
Target Start/End: Original strand, 11289 - 11563
Alignment:
Q  25 ctcaatgtaaatagagctttattatttcaatccaaactcccaccttcttttt------atgctattcttcatgctatgtttctaatcaa-agagtttcta 117  Q
    |||||||||  |||||||||||||||||||||||||||||||||||| ||||      ||||||||||||||||| |||| |||||||| |||||| |||    
T  11289 ctcaatgtaggtagagctttattatttcaatccaaactcccaccttccttttggtcatatgctattcttcatgctgtgttcctaatcaacagagttccta 11388  T
Q  118 ctcctgttcttcataaccagtcaccttattttgtcttgcataacaagttacctgctctcaatttgttcaaagtgtttggttgcttgtgttatgcctctac 217  Q
    ||||| |||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  11389 ctcctattcttcataatcagtcaccttattttgtcttgcatcaccagttacctgctctcaatttgtttaaagtgtttggttgcttgtgttatgcttctac 11488  T
Q  218 tcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttaggctacaaatcaggttttaa 292  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||| ||||||    
T  11489 tctccaatctcacagaacaaaattgcaacctagagctcgtaaatctatttttttaggttacaaatcagattttaa 11563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 25 - 292
Target Start/End: Complemental strand, 22176942 - 22176668
Alignment:
Q  25 ctcaatgtaaatagagctttattatttcaatccaaactcccaccttcttttt------atgctattcttcatgctatgtttctaatcaa-agagtttcta 117  Q
    |||||||||  |||||||||||||||||||||||||||||||||||| ||||      ||||||||||||||||| |||| |||||||| |||||| |||    
T  22176942 ctcaatgtaggtagagctttattatttcaatccaaactcccaccttccttttggtcatatgctattcttcatgctgtgttcctaatcaacagagttccta 22176843  T
Q  118 ctcctgttcttcataaccagtcaccttattttgtcttgcataacaagttacctgctctcaatttgttcaaagtgtttggttgcttgtgttatgcctctac 217  Q
    ||||| |||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  22176842 ctcctattcttcataatcagtcaccttattttgtcttgcatcaccagttacctgctctcaatttgtttaaagtgtttggttgcttgtgttatgcttctac 22176743  T
Q  218 tcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttaggctacaaatcaggttttaa 292  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||| ||||||    
T  22176742 tctccaatctcacagaacaaaattgcaacctagagctcgtaaatctatttttttaggttacaaatcagattttaa 22176668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 23167287 - 23167198
Alignment:
Q  179 tttgttcaaagtgtttggttgcttgtgttatgcctctactcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccatttt 268  Q
    |||||||||||| |||||||| || || |||||||||||| | |||||||| | |||||||||| ||| ||||||  |||||||||||||    
T  23167287 tttgttcaaagtttttggttgtttatgctatgcctctactttacaatctcatacaacaaaattgaaacatagagccagaaaatccatttt 23167198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 22643807 - 22643889
Alignment:
Q  192 tttggttgcttgtgttatgcctctactcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttagg 274  Q
    ||||||||||| |||||||| || |||||||||  ||||||||| ||||| ||| |||||||| |||||||||| ||| ||||    
T  22643807 tttggttgcttatgttatgcttccactcttcaaaatcacagaaccaaattacaatctagagctagaaaatccatcttcctagg 22643889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 17130012 - 17130073
Alignment:
Q  183 ttcaaagtgtttggttgcttgtgttatgcctctactcttcaatctcacagaacaaaattgca 244  Q
    |||| ||| |||||||||||||||||||| |||||||| ||| |||| ||||||||||||||    
T  17130012 ttcagagtttttggttgcttgtgttatgcatctactctacaagctcatagaacaaaattgca 17130073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 296
Target Start/End: Original strand, 5239791 - 5239904
Alignment:
Q  183 ttcaaagtgtttggttgcttgtgttatgcctctactcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttaggctacaaat 282  Q
    |||||||| |||||||| || |||||||| || ||| | || ||||| ||||| ||| |||||||||||||| |||| ||  | |||||||| ||||| |    
T  5239791 ttcaaagtttttggttgtttatgttatgcttccactttacattctcatagaaccaaactgcaacctagagctagaaagtctctattcttaggttacaagt 5239890  T
Q  283 caggttttaagggt 296  Q
    | |||| |||||||    
T  5239891 ctggttataagggt 5239904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 286
Target Start/End: Original strand, 5119571 - 5119670
Alignment:
Q  186 aaagtgtttggttgcttgtgttatgcctctactcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttaggctacaaatcag 285  Q
    ||||| ||||| || |||| |||||| |||||||||||  |||| | |||| |||||||| |||||||| |||||||  |||||||||| ||||| ||||    
T  5119571 aaagtttttggatgtttgtcttatgcttctactcttcaggctcata-aacataattgcaatctagagctagaaaatctgttttcttagggtacaagtcag 5119669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 39481332 - 39481261
Alignment:
Q  356 ttaatagaaagtatccc--aatcaaatacccaatttgctattcaaaaatgatggcacaaaactcaaatctct 425  Q
    |||| ||||||||||||  ||| |||||||| || || ||||||||||||||| ||||||||||| ||||||    
T  39481332 ttaagagaaagtatcccccaataaaataccccatctgttattcaaaaatgatgacacaaaactcatatctct 39481261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 296
Target Start/End: Original strand, 10653188 - 10653301
Alignment:
Q  183 ttcaaagtgtttggttgcttgtgttatgcctctactcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttaggctacaaat 282  Q
    |||||||| |||||||| || |||||||| || ||| | || ||||| ||||| ||| || ||||||||||| |||| ||  | |||||||| ||||| |    
T  10653188 ttcaaagtttttggttgtttatgttatgcttccactttacattctcatagaaccaaactgtaacctagagctagaaagtctctattcttaggttacaagt 10653287  T
Q  283 caggttttaagggt 296  Q
    | |||| |||||||    
T  10653288 ctggttataagggt 10653301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 296
Target Start/End: Original strand, 10867333 - 10867446
Alignment:
Q  183 ttcaaagtgtttggttgcttgtgttatgcctctactcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttaggctacaaat 282  Q
    |||||||| |||||||| || |||||||| || ||| | || ||||| ||||| ||| || ||||||||||| |||| ||  | |||||||| ||||| |    
T  10867333 ttcaaagtttttggttgtttatgttatgcttccactttacattctcatagaaccaaactgtaacctagagctagaaagtctttattcttaggttacaagt 10867432  T
Q  283 caggttttaagggt 296  Q
    | |||| |||||||    
T  10867433 ctggttataagggt 10867446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 8123035 - 8122971
Alignment:
Q  189 gtgtttggttgcttgtgttatgcctctactcttcaatctcacagaacaaaattgcaacctagagc 253  Q
    ||||||||||| ||||||||||| || || |||||| |||| ||||| || || |||||||||||    
T  8123035 gtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagttacaacctagagc 8122971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 39481401 - 39481365
Alignment:
Q  287 ttttaagggtgattctactatctatctatgtggttct 323  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  39481401 ttttaagggtgattctactatgtatctatgtgattct 39481365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 287 - 488
Target Start/End: Complemental strand, 43651059 - 43650859
Alignment:
Q  287 ttttaagggtgattctactatctatctatgtggttctacttatagnnnnnnnnnnnggtgattatactcttaatagaaagtatcccaatcaaatacccaa 386  Q
    |||||||||||||||||||||||||||||||||||||| ||||||           ||||||| |||||||||||||||||||||||||||||||||| |    
T  43651059 ttttaagggtgattctactatctatctatgtggttctatttatagtttttttttt-ggtgattctactcttaatagaaagtatcccaatcaaatacccca 43650961  T
Q  387 tttgctattcaaaaatgatggcacaaaactcaaatctcttatatcaaatagtatgatttacattcaagagtggttgcattgatgaagtggactccaccat 486  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  43650960 tctgctattcaaaaatgatggcacaaaactcaaatctcttatatcaaatagtatgatttacattcaagagtggttgtgttgatgaagtggactccaccat 43650861  T
Q  487 tt 488  Q
    ||    
T  43650860 tt 43650859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 344 - 488
Target Start/End: Complemental strand, 21114205 - 21114061
Alignment:
Q  344 gtgattatactcttaatagaaagtatcccaatcaaatacccaatttgctattcaaaaatgatggcacaaaactcaaatctcttatatcaaatagtatgat 443  Q
    |||||| |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21114205 gtgattctactcttaatagaaagtatcccaatcaaataccccatctgatattcaaaaatgatggcacaaaactcaaatctcttatatcaaatagtatgat 21114106  T
Q  444 ttacattcaagagtggttgcattgatgaagtggactccaccattt 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  21114105 ttacattcaagagtggttgcattgatgaagtggactccaccattt 21114061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 21114268 - 21114224
Alignment:
Q  287 ttttaagggtgattctactatctatctatgtggttctacttatag 331  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  21114268 ttttaagggtgattctactatctatctatgtggttctatttatag 21114224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 280
Target Start/End: Complemental strand, 16990689 - 16990592
Alignment:
Q  183 ttcaaagtgtttggttgcttgtgttatgcctctactcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttaggctacaa 280  Q
    |||||||| ||||||||| | |||||||| ||||| |||||| |||| ||||||||||| ||| |||||||  |||| |  ||||||||||| |||||    
T  16990689 ttcaaagtttttggttgcctttgttatgcttctacacttcaagctcatagaacaaaattacaatctagagccagaaagtgtattttcttaggttacaa 16990592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 20323998 - 20323926
Alignment:
Q  75 ttatgctattcttcatgctatgtttctaatcaa-agagtttctactcctgttcttcataaccagtcaccttat 146  Q
    |||||| |||||||||||| ||||| ||||||| |||||| |||||| |||||||||||| ||||| ||||||    
T  20323998 ttatgccattcttcatgctgtgtttttaatcaatagagttcctactcatgttcttcataatcagtctccttat 20323926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 38929834 - 38929791
Alignment:
Q  287 ttttaagggtgattctactatctatctatgtggttctacttata 330  Q
    ||||||||||||||||| |||||||||||||| |||||||||||    
T  38929834 ttttaagggtgattctagtatctatctatgtgattctacttata 38929791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 15449145 - 15449248
Alignment:
Q  183 ttcaaagtgtttggttgcttgtgttatgcctctactcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttaggctacaaat 282  Q
    ||||||||||||||||||||||||||||| ||  || | ||| |||| ||||| || |||||  | |||||| ||||| |||| ||  |||| |||||||    
T  15449145 ttcaaagtgtttggttgcttgtgttatgcttcatctttacaagctcatagaactaagttgcattccagagctagaaaagccatatttataggttacaaat 15449244  T
Q  283 cagg 286  Q
    ||||    
T  15449245 cagg 15449248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 11924710 - 11924752
Alignment:
Q  183 ttcaaagtgtttggttgcttgtgttatgcctctactcttcaat 225  Q
    |||||||| |||||||||||||||||||| ||||| |||||||    
T  11924710 ttcaaagtttttggttgcttgtgttatgcttctacacttcaat 11924752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 115 - 288
Target Start/End: Original strand, 29499740 - 29499913
Alignment:
Q  115 ctactcctgttcttcataaccagtcaccttattttgtcttgcataacaagttacctgctctcaatttgttcaaagtgtttggttgcttgtgttatgcctc 214  Q
    |||| ||||| ||| |||| || |||||||||||||| ||||||||||||||||||   ||||||||||||||||| |||   || || || ||||| ||    
T  29499740 ctacacctgtacttaataatcaatcaccttattttgtattgcataacaagttacctaacctcaatttgttcaaagtatttatatgtttatgctatgcttc 29499839  T
Q  215 tactcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttaggctacaaatcaggtt 288  Q
     || ||||| ||||||||||||||||| ||||| ||||||  ||||||  |||||||||| |||||||||||||    
T  29499840 aacccttcattctcacagaacaaaattacaacccagagctataaaatctcttttcttaggatacaaatcaggtt 29499913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 280
Target Start/End: Complemental strand, 20483521 - 20483427
Alignment:
Q  186 aaagtgtttggttgcttgtgttatgcctctactcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttaggctacaa 280  Q
    ||||| ||||||||| | |||||||| ||||| |||||| |||| ||||||||||| ||| |||||||  |||| |  ||||||||||| |||||    
T  20483521 aaagtttttggttgcctttgttatgcttctacacttcaagctcatagaacaaaattacaatctagagccagaaagtgtattttcttaggttacaa 20483427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 428
Target Start/End: Complemental strand, 24863367 - 24863331
Alignment:
Q  392 tattcaaaaatgatggcacaaaactcaaatctcttat 428  Q
    |||||||||||||||||||| ||||||||||||||||    
T  24863367 tattcaaaaatgatggcacagaactcaaatctcttat 24863331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 488
Target Start/End: Complemental strand, 24863325 - 24863286
Alignment:
Q  449 ttcaagagtggttgcattgatgaagtggactccaccattt 488  Q
    ||||||||||||||| |||||||||||| |||||||||||    
T  24863325 ttcaagagtggttgcgttgatgaagtgggctccaccattt 24863286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 280
Target Start/End: Original strand, 28017663 - 28017757
Alignment:
Q  186 aaagtgtttggttgcttgtgttatgcctctactcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttaggctacaa 280  Q
    ||||| ||||||||| | |||||||| ||||| |||||| |||| | ||||||||| ||| |||||||  |||| |  ||||||||||| |||||    
T  28017663 aaagtttttggttgcctttgttatgcttctacacttcaagctcatataacaaaattacaatctagagccagaaagtgtattttcttaggttacaa 28017757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0669 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 76 - 295
Target Start/End: Original strand, 250 - 470
Alignment:
Q  76 tatgctattcttcatgctatgtttctaatcaa-agagtttctactcctgttcttcataaccagtcaccttattttgtcttgcataacaagttacctgctc 174  Q
    |||| ||||||||||||| | ||||| ||||| |||||  |||| ||| | ||  | ||||| |||||||||||| || ||||||||||||||||||  |    
T  250 tatgttattcttcatgctgtctttctcatcaatagagtccctacacctttgctcaaaaaccactcaccttattttttcatgcataacaagttacctgacc 349  T
Q  175 tcaatttgttcaaagtgtttggttgcttgtgttatgcctctactcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttagg 274  Q
    ||||| |||| ||||||||||||||  | ||||| |  || || ||| ||||||| ||||| ||||| |||||||||| |  |||||| ||||| |||||    
T  350 tcaatctgtttaaagtgtttggttgtgtatgttagggttcaacacttaaatctcatagaaccaaattacaacctagagatataaaatctatttttttagg 449  T
Q  275 ctacaaatcaggttttaaggg 295  Q
     ||||| ||||||| ||||||    
T  450 atacaagtcaggttataaggg 470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 356 - 428
Target Start/End: Original strand, 82252 - 82324
Alignment:
Q  356 ttaatagaaagtatcccaatcaaatacccaatttgctattcaaaaatgatggcacaaaactcaaatctcttat 428  Q
    |||| ||||||||||||||| |||||||  ||    |||||||||||||||||||||||||||||||||||||    
T  82252 ttaagagaaagtatcccaataaaataccacatcctttattcaaaaatgatggcacaaaactcaaatctcttat 82324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 356 - 428
Target Start/End: Original strand, 19381543 - 19381615
Alignment:
Q  356 ttaatagaaagtatcccaatcaaatacccaatttgctattcaaaaatgatggcacaaaactcaaatctcttat 428  Q
    |||| ||||||||||||||| |||||||  ||    |||||||||||||||||||||||||||||||||||||    
T  19381543 ttaagagaaagtatcccaataaaataccacatcctttattcaaaaatgatggcacaaaactcaaatctcttat 19381615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 296
Target Start/End: Original strand, 14815249 - 14815362
Alignment:
Q  183 ttcaaagtgtttggttgcttgtgttatgcctctactcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttaggctacaaat 282  Q
    |||||||| |||||||| || |||||||| || ||| | || ||||| ||||| ||| |||||||||||||| |||| ||  | |||||||| ||||| |    
T  14815249 ttcaaagtttttggttgtttatgttatgcttccactttacattctcatagaaccaaactgcaacctagagctagaaagtctctattcttaggttacaagt 14815348  T
Q  283 caggttttaagggt 296  Q
    | |||| |||||||    
T  14815349 ctggttataagggt 14815362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 280
Target Start/End: Original strand, 6342634 - 6342728
Alignment:
Q  186 aaagtgtttggttgcttgtgttatgcctctactcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttaggctacaa 280  Q
    ||||| ||||||||| | |||||||| ||||| |||||| |||| | ||||||||| ||| |||||||  |||| |  ||||||||||| |||||    
T  6342634 aaagtttttggttgcctttgttatgcttctacacttcaagctcatataacaaaattacaatctagagccagaaagtgtattttcttaggttacaa 6342728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 3572911 - 3572868
Alignment:
Q  287 ttttaagggtgattctactatctatctatgtggttctacttata 330  Q
    ||||||||||||||||||||||||| |||||| |||||||||||    
T  3572911 ttttaagggtgattctactatctatttatgtgattctacttata 3572868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 9331590 - 9331519
Alignment:
Q  356 ttaatagaaagtatccc--aatcaaatacccaatttgctattcaaaaatgatggcacaaaactcaaatctct 425  Q
    |||| ||||||||||||  ||| |||||||| || || ||||||||||||||| ||||||||||| ||||||    
T  9331590 ttaagagaaagtatcccccaataaaataccccatctgttattcaaaaatgatgacacaaaactcagatctct 9331519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1416 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1416
Description:

Target: scaffold1416; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 280
Target Start/End: Complemental strand, 1097 - 1003
Alignment:
Q  186 aaagtgtttggttgcttgtgttatgcctctactcttcaatctcacagaacaaaattgcaacctagagctcgaaaatccattttcttaggctacaa 280  Q
    ||||| ||||||||| | |||||||| ||||| |||||| |||| | ||||||||| ||| |||||||  |||| |  ||||||||||| |||||    
T  1097 aaagtttttggttgcctttgttatgcttctacacttcaagctcatataacaaaattacaatctagagccagaaagtgtattttcttaggttacaa 1003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University