View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8756_high_10 (Length: 399)
Name: NF8756_high_10
Description: NF8756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8756_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 39812327 - 39811937
Alignment:
| Q |
1 |
gctgcctgagtgagtttaaacacatatttaataacacta--acattaaaatgtgaatatgtcaccaaagtggtaagttagttaagacttacctcaattaa |
98 |
Q |
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| T |
39812327 |
gctgcctgagtgagtttaaacacatatttaataacactataacattaaaatgtgaatatgtcaccaaagtggtaagttagttaagacttacctcaattaa |
39812228 |
T |
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| Q |
99 |
agtaagaccaaaaggttccactaaagcaggatttataaaaactccctgagaaaaatatcaaactagttagccagctagctatatcattacgactgcagaa |
198 |
Q |
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| T |
39812227 |
agtaagaccaaaaggttccactaaagcaggatttatgaaaactccctgagaaaaatatcaaactagttagttggctagctatatcattacgactgcagaa |
39812128 |
T |
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| Q |
199 |
gaagtgtgttttgtacatatattctacatacctttgttttagcagcaaatctatatatctcaggtacatcagattgtctatgatgtttagggtatgcgac |
298 |
Q |
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| T |
39812127 |
gaagtgtgttttgtacatatattctacatacctttgttttagcagcaaatctatatatctcaggtacatcagattgtctatgatgtttagggtatgcgac |
39812028 |
T |
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| Q |
299 |
atgtccatataggtcatatttgtcaatcagtttcaacacagttgtgagaacattgccactcccagaagacatatcttctatgtcatctctg |
389 |
Q |
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| T |
39812027 |
atgtccatataggtcatacttgtcaatcagtttcaacacagttgtgagaacattgccactcccagaagacatatcttctatgtcatctctg |
39811937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 15799821 - 15799751
Alignment:
| Q |
75 |
ttagttaagacttacctcaattaaagtaagaccaaaaggttccactaaagcaggatttataaaaactccct |
145 |
Q |
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| T |
15799821 |
ttagttaatacctacctcaattaaagtaagaccaaaaggctcaactagtgcaggatttatgaaaacaccct |
15799751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 15799460 - 15799402
Alignment:
| Q |
279 |
tgatgtttagggtatgcgacatgtccatataggtcatatttgtcaatcagtttcaacac |
337 |
Q |
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| T |
15799460 |
tgatgtttagggtatgcaacttgtccatagaggtcatacttatcaatcaacttcaacac |
15799402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 47756669 - 47756745
Alignment:
| Q |
251 |
atatatctcaggtacatcagattgtctatgatgtttagggtatgcgacatgtccatataggtcatatttgtcaatca |
327 |
Q |
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| T |
47756669 |
atatatttcaggaacatcagattgtttgtggtgtttaggatatgccacttgcccatacaggtcatacttatcaatca |
47756745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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