View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8756_high_14 (Length: 386)
Name: NF8756_high_14
Description: NF8756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8756_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 8 - 367
Target Start/End: Original strand, 24830288 - 24830646
Alignment:
| Q |
8 |
gagtttggtgttgaagagaattgaagagatagagcaaatgatgaaagacaatgagtgaaacaaattttagtgactatagaaggatattgtattgtcttgc |
107 |
Q |
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| T |
24830288 |
gagtttagtgttgaagagaattgaagagatagagcaaatgatgaaagacaatgagtgaaacaaattttagtgactatagaaggatattgtattgtcttgc |
24830387 |
T |
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| Q |
108 |
atgaagtgcactctaggaatattcacatatattcatctgtaacactannnnnnnnatgagaatgacacattatccaaagcagataaggattaactcctat |
207 |
Q |
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| T |
24830388 |
atgaagtgcactctaggaatattcacatatattcatctgtaacactattttttt-atgagaatgacacattatccaaagcagataaggatcaactcctat |
24830486 |
T |
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| Q |
208 |
tattacaggagttaatccttttctgctttgaacattatttcagaagagataaaaatctctttgatgtagagaaattattgtttccattattttttagatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24830487 |
tattacaggagttaatccttttctgctttgaacattatttcagaagagataaaaatctctttgatgtagagaaattattgtttccattattttttagatt |
24830586 |
T |
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| Q |
308 |
agtagttattgttgtaatttgttctaaatagagaaatacactcttcaaagttgtgagatt |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24830587 |
agtagttattgttgtaatttgttctaaatagagaaatacactcttcaaagttgtgagatt |
24830646 |
T |
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