View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8756_high_15 (Length: 349)
Name: NF8756_high_15
Description: NF8756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8756_high_15 |
 | |
|
| [»] scaffold0252 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 333
Target Start/End: Complemental strand, 7733299 - 7732977
Alignment:
| Q |
11 |
cagagataaagtcagagactttggttttagattttggtatgaacaaagcatcactgccagtgtcacctgaaaaaattgcatcaactaatggattaattat |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7733299 |
cagagataaagtcagagactttgattttagattttggtatgaacaaagcatcactgccagtgtcacctgaaaaaattgcatcaactaatggattaattat |
7733200 |
T |
|
| Q |
111 |
gttagcaccacatgtattgtttgagcaacctggtttgaaaggaccattgcagctagtgcatccagcatcattagtgcattgtttggattcacaagagatg |
210 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7733199 |
gtttgcaccacatgtattgtttgagcaacctggtttgaaaggaccattgcagctagtgcatccagcatcattagtgcaatgtttggattcacaagagatg |
7733100 |
T |
|
| Q |
211 |
ggcttataggttgaagagttgtaggctttgttgcagtcataccataggattggtcctccaatatcaatcacaaaattgaattcatgtgtaggttctgttc |
310 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7733099 |
ggattgtaggttgaagagttgtaggctttgttgcagtcataccataggattggtcctccaatatcaatcacaaaattgaattcatgtgtaggttctgttc |
7733000 |
T |
|
| Q |
311 |
ctacccaaagtaatgtggagaat |
333 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
7732999 |
ctacccaaagtaatgtggagaat |
7732977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 333
Target Start/End: Complemental strand, 7710989 - 7710667
Alignment:
| Q |
11 |
cagagataaagtcagagactttggttttagattttggtatgaacaaagcatcactgccagtgtcacctgaaaaaattgcatcaactaatggattaattat |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7710989 |
cagagataaagtcagagactttgattttagattttggtatgaacaaagcatcactgccagtgtcacctgaaaaaattgcatcaactaatggattaattat |
7710890 |
T |
|
| Q |
111 |
gttagcaccacatgtattgtttgagcaacctggtttgaaaggaccattgcagctagtgcatccagcatcattagtgcattgtttggattcacaagagatg |
210 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7710889 |
gtttgcaccacatgtattgtttgagcaacctggtttgaaaggaccattgcagctagtgcatccagcatcattagtgcaatgtttggattcacaagagatg |
7710790 |
T |
|
| Q |
211 |
ggcttataggttgaagagttgtaggctttgttgcagtcataccataggattggtcctccaatatcaatcacaaaattgaattcatgtgtaggttctgttc |
310 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7710789 |
ggattgtaggttgaagagttgtaggctttgttgcagtcataccataggattggtcctccaatatcaatcacaaaattgaattcatgtgtaggttctgttc |
7710690 |
T |
|
| Q |
311 |
ctacccaaagtaatgtggagaat |
333 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
7710689 |
ctacccaaagtaaagtggagaat |
7710667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 35 - 330
Target Start/End: Complemental strand, 7725865 - 7725570
Alignment:
| Q |
35 |
ttttagattttggtatgaacaaagcatcactgccagtgtcacctgaaaaaattgcatcaactaatggattaattatgttagcaccacatgtattgtttga |
134 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
7725865 |
ttttagattttggtatgaacaaagaatcactgccagtgtcacctgaaaaaatagcatcaactaatgggttaattatgttagcaccacatgtgttgtttgt |
7725766 |
T |
|
| Q |
135 |
gcaacctggtttgaaaggaccattgcagctagtgcatccagcatcattagtgcattgtttggattcacaagagatgggcttataggttgaagagttgtag |
234 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||| |||||| |||||| |
|
|
| T |
7725765 |
gcaacctggtttgaaagggccattgcagctagtgcatccagcatcattagtgcaatgtttggattcacaagagatgggattgtaggctgaagaattgtag |
7725666 |
T |
|
| Q |
235 |
gctttgttgcagtcataccataggattggtcctccaatatcaatcacaaaattgaattcatgtgtaggttctgttcctacccaaagtaatgtggag |
330 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |
|
|
| T |
7725665 |
gttttgttgcagtcataccataggattggtcctccaatatcaatcacaaaattgaattcatgtgtaggtaatgatcctacccaaagtaaagtggag |
7725570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 7746611 - 7746908
Alignment:
| Q |
16 |
ataaagtcagagactttggttttagattttggtatgaacaaagcatcactgccagtgtcacctgaaaaaattgcatcaactaatggattaattatgttag |
115 |
Q |
| |
|
|||||||||| || || | ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
7746611 |
ataaagtcagggatttggattttagattttggtatgaacaaaaaatcactgccagtgtcacctgaaaaaatagcatcaactaatgggttaattatgttag |
7746710 |
T |
|
| Q |
116 |
caccacatgtattgtttgagcaacctggtttgaaaggaccattgcagctagtgcatccagcatcattagtgcattgtttggattcacaagagatgggctt |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| | ||||||||||| |||||||||||||||||| ||| ||||||||| ||||||||||||||| |
|
|
| T |
7746711 |
caccacatgtgttgtttgagcaacctggtttgaaatggccattgcagcttatgcatccagcatcattagggcaaagtttggattgacaagagatgggctt |
7746810 |
T |
|
| Q |
216 |
ataggttgaagagttgtaggctttgttgcagtcataccataggattggtcctccaatatcaatcacaaaattgaattcatgtgtaggttctgttccta |
313 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
7746811 |
gtaggttgaagaagtgtaggttttgttgcagtcataccataagattggtcctccaatatcaatcacaagattgaattgatgtgtaggttctgttccta |
7746908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 48 - 290
Target Start/End: Complemental strand, 7698929 - 7698687
Alignment:
| Q |
48 |
tatgaacaaagcatcactgccagtgtcacctgaaaaaattgcatcaactaatggattaattatgttagcaccacatgtattgtttgagcaacctggtttg |
147 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| |||||| |||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7698929 |
tatgaacaaaacatcattgccagtgtcacctacaaaaatagcattgactaatgggttaattatgttagcagcacatgtattgtttgagcaacctggtttg |
7698830 |
T |
|
| Q |
148 |
aaaggaccattgcagctagtgcatccagcatcattagtgcattgtttggattcacaagagatgggcttataggttgaagagttgtaggctttgttgcagt |
247 |
Q |
| |
|
||||| ||| ||||| |||||||||| | |||| ||| | ||||| |||||||||||||| || |||||||||||||| ||| ||||||||||| |
|
|
| T |
7698829 |
aaagggccagagcagccagtgcatccactaaatttagggcaaagcttggagtcacaagagatgggattgtaggttgaagagttatagtttttgttgcagt |
7698730 |
T |
|
| Q |
248 |
cataccataggattggtcctccaatatcaatcacaaaattgaa |
290 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | |||||| |
|
|
| T |
7698729 |
cataccatatagttggtcctccaatatcaatcactagattgaa |
7698687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 11187 - 11146
Alignment:
| Q |
120 |
acatgtattgtttgagcaacctggtttgaaaggaccattgca |
161 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || |||||||| |
|
|
| T |
11187 |
acatgtattgtttgtgcaacctggtttgaaggggccattgca |
11146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University