View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8756_high_18 (Length: 297)
Name: NF8756_high_18
Description: NF8756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8756_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 7341689 - 7341959
Alignment:
| Q |
19 |
aatgctacatgacgtcaattcatccaattacaaccatttgaggaagaaccatgaaaatcactaattaatttctactccaacattccttcattgtaggttc |
118 |
Q |
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| T |
7341689 |
aatgctacatgacgtcaattcatccaattacaaccatttgaggaagaaccatgaaaatcactaattaatttctactccaacattccttcattgtaggttc |
7341788 |
T |
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| Q |
119 |
agattaaattgaagcaaaaacaggctaccatataagataatctaataattagttgcaacatttcagaagagagtaacacaaaatcagaactaagaggatg |
218 |
Q |
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| T |
7341789 |
agattaaattgaagcaaaaacaggctaccatataagataatctaataattagttgcaacatttcagaagagagtaacacaaaatcagaactaagaggatg |
7341888 |
T |
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| Q |
219 |
aagattttgctgagttgatataaatccgcatatagctttgaagatacttcactctgtcttccacaggttct |
289 |
Q |
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| T |
7341889 |
aagattttgctgagttgatataaatccgcatatagctttggagatacttcactctgtcttccacagtttct |
7341959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 284
Target Start/End: Complemental strand, 6829259 - 6829089
Alignment:
| Q |
116 |
ttcagattaaattgaagcaaaaacaggctaccatataagataatctaataattagttgcaacatttcagaagagagtaaca--caaaatcagaactaaga |
213 |
Q |
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| T |
6829259 |
ttcatattgaattgaagcaaaaacatgcaaccatacaagataatctagaaatcagtagcaacattccaaaagacaataaaagacaaaatcagaactatga |
6829160 |
T |
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| Q |
214 |
ggatgaagattttgctgagttgatataaatccgcatatagctttgaagatacttcactctgtcttccacag |
284 |
Q |
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| T |
6829159 |
ggatgaagatatttctgacttgagataaattcgaataaagcctcggagacacttcattctatcctccacag |
6829089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 7353742 - 7353838
Alignment:
| Q |
97 |
aacattccttcattgtaggttcagattaaattgaagcaaaaacaggctaccatataagataatc---taataattagttgcaacatttcagaagaga |
190 |
Q |
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| T |
7353742 |
aacattccttcattgtagtttcagattaaatcaaaacagaaacaagcagccatataagataatcagataaccagtagttgcaacatttcaaaagaga |
7353838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 7303233 - 7303294
Alignment:
| Q |
145 |
accatataagataatctaat-aattagttgcaacatttcagaagagagt-aacacaaaatca |
204 |
Q |
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| T |
7303233 |
accatataagataatcaaataaatcagttgtaacatttcaaaagagagtaaacacaaaatca |
7303294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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