View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8756_high_2 (Length: 671)
Name: NF8756_high_2
Description: NF8756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8756_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 8238974 - 8239344
Alignment:
| Q |
19 |
gaatgactaaaatgttgacctaaaaaccatttccacaaggtgaatttaatcatatccaccggttgatgcttagagatcaccatttccaggaagataaaat |
118 |
Q |
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| T |
8238974 |
gaatgactaaaatgttgacctaaaaaccatttccacaaggtgaatttaatcatatccaccgattgatgcttagagatcatcattcccaggaagataaaat |
8239073 |
T |
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| Q |
119 |
cactttgaggcctccagatagagcacacaaaagaatgtaagaccagtatgagacctattccaacctttcttccatctcaagccccaaaacaaaactaagg |
218 |
Q |
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| T |
8239074 |
cgctttgaggcctcccgatagaccacacaaaagaatgtaagaccagtatgagacctattccaacctttcttccatctcaagccccaaaacaaaactaagg |
8239173 |
T |
|
| Q |
219 |
gtacttcccaactccaaaggtagcggaaactcctagcctaaccacctgaaaactatataccacaccggactaaagaacaagcacataacaaacaaatgac |
318 |
Q |
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| T |
8239174 |
gtacttcccaactccaaaggtagcggaaactcctagcctaaccacctgaaaactatataccacaccggactaaagaacaagcacataacaaacaaatgac |
8239273 |
T |
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| Q |
319 |
tagtcgactcaatcaacgttccacaaaaactacaagagatactaccaggataaccctcacaacaaaaagat |
389 |
Q |
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| T |
8239274 |
tagtcgactcaatcaacgtcccacaaaaactacaagagatacccccatgataaccctcacaacaaaaagat |
8239344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 386 - 662
Target Start/End: Original strand, 8239671 - 8239942
Alignment:
| Q |
386 |
agatggacacctgatacaacctagggaacaaagaacgcaaccttaccacctggtcattcaaaaaggatgtggagcacccattcacctaatctagatttat |
485 |
Q |
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| T |
8239671 |
agatggacacctgatacaacctagggaacaaagaacgcaaccttaccacctggtcattcaaaaaggatgtggagcacccattcacctaatctagatttat |
8239770 |
T |
|
| Q |
486 |
agtgcttaatcaaaatcttaggcaaaatttcaacaagctaagtaaaagagaaggaagtttgctggaaaataaagctagacaaaatgttcgaagatgagaa |
585 |
Q |
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| |||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8239771 |
aatgcttaatcaaaatgttaggcaaaatttcaacaag-----tgaaagagaaggaagtttgctggaaaataaagctagacaaaatgtttgaagatgagaa |
8239865 |
T |
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| Q |
586 |
tagccgaagtattttgggatgtaaaaatggatatgcgtgcttaataggtctcattgacaagaagccgtgagaattat |
662 |
Q |
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| T |
8239866 |
tagccgatgtattttgggatgtaaaaatggatatgcgtgcttaataggtctcattgacaagaaatcgtgagaattat |
8239942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 510
Target Start/End: Complemental strand, 34704733 - 34704688
Alignment:
| Q |
464 |
cattcacctaatctagatttatagtgcttaatcaaaatcttaggcaa |
510 |
Q |
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| T |
34704733 |
cattcacctaatctagttttatagtgcttaa-caaaatcttaggcaa |
34704688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 8692370 - 8692422
Alignment:
| Q |
21 |
atgactaaaatgttgacctaaaaaccatttccacaaggtgaatttaatcatat |
73 |
Q |
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| T |
8692370 |
atgaccaaaatgttttcctaaaaaccatttccaaaaggtaaatttaaccatat |
8692422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 18978329 - 18978369
Alignment:
| Q |
470 |
cctaatctagatttatagtgcttaatcaaaatcttaggcaa |
510 |
Q |
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| T |
18978329 |
cctaatctagttttatagtacttaatcaaaatcataggcaa |
18978369 |
T |
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