View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8756_high_20 (Length: 270)
Name: NF8756_high_20
Description: NF8756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8756_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 37901316 - 37901570
Alignment:
| Q |
1 |
aatctaaggatccgcacgacggcacgagttagccaaatgagggtgggtaagaagagttgagaagaatttgtgaatgtccggtacaatgcaatgaagaaag |
100 |
Q |
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| T |
37901316 |
aatctaaggatccgcacgacggcacaagttagccaaatgagggtgggtaagaagagttgagaagaatttgtgaatgtctggtacaatgcaatgaagaaag |
37901415 |
T |
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| Q |
101 |
cgacgatacctgcatgttaagattgagaaaacaaatatggtcaatgcagtttacagtagaagtactattcaagttgtaaatagagtaacataacatacca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37901416 |
cgacgatacctgcatgttaagattgagaaaacaaatatggtcaatccagtttacagtagaagtactattcaagttgtaaatagagtaacataacatacca |
37901515 |
T |
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| Q |
201 |
tggtttggtactcagattatcaaattgctccaggacaaagagtatgcatgcatat |
255 |
Q |
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| T |
37901516 |
tggtttggtactcagattatcaaattgctccaggacaaagagtatgcatgcatat |
37901570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 37907827 - 37908081
Alignment:
| Q |
1 |
aatctaaggatccgcacgacggcacgagttagccaaatgagggtgggtaagaagagttgagaagaatttgtgaatgtccggtacaatgcaatgaagaaag |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37907827 |
aatctaaggatccgcacgacggcacaagttagccaaatgagggtgggtaagaagagttgagaagaatttgtgaatgtctggtacaatgcaatgaagaaag |
37907926 |
T |
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| Q |
101 |
cgacgatacctgcatgttaagattgagaaaacaaatatggtcaatgcagtttacagtagaagtactattcaagttgtaaatagagtaacataacatacca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37907927 |
cgacgatacctgcatgttaagattgagaaaacaaatatggtcaatccagtttacagtagaagtactattcaagttgtaaatagagtaacataacatacca |
37908026 |
T |
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| Q |
201 |
tggtttggtactcagattatcaaattgctccaggacaaagagtatgcatgcatat |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37908027 |
tggtttggtactcagattatcaaattgctccaggacaaagagtatgcatgcatat |
37908081 |
T |
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