View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8756_high_3 (Length: 559)

Name: NF8756_high_3
Description: NF8756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8756_high_3
NF8756_high_3
[»] scaffold0170 (1 HSPs)
scaffold0170 (1-559)||(13049-13607)


Alignment Details
Target: scaffold0170 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 13607 - 13049
Alignment:
Q  1 ttggaaaagagggaagtaggaactaagttagctactgcattagcaagaaacaaatcagaggtaagaacactgcatcatgaagaaatagannnnnnnagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  13607 ttggaaaagagggaagtaggaactaagttagctactgcattagcaagaaacaaatcagaggtaagaacactgcatcatgaagaaatagatttttttagtt 13508  T
Q  101 cattattctcatgttcattaatatgggacttggattattccgaatataccatcttaaattattaaaatatttaaaacttatctgtttttaatatggtact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13507 cattattctcatgttcattaatatgggacttggattattccgaatataccatcttaaattattaaaatatttaaaacttatctgtttttaatatggtact 13408  T
Q  201 tcgattttgttcgatataccctttcacatccaatactattgggtttagcgagtggttaattatgtggatgacctgaatggataaactctgatatcatatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  13407 tcgattttgttcgatataccctttcacatccaatactattgggtttagcgactggttaattctgtggatgacccgaatggataaactctgatatcatatt 13308  T
Q  301 agattttttatattgtatataattctaactctttattacaatccgacttataaggtgagatgtgccactctttataagctcttttccgacgttatcaatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13307 agattttttatattgtatataattctaactctttattacaaaccgacttataaggtgagatgtgccactctttataagctcttttccgacgttatcaatt 13208  T
Q  401 ttcgatgtgagatttgagttgttttcaatacgactgtcctgagagcaaagtgaaaggagtttcttataatacaatacaaccagaaaccatgtttgttcat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13207 ttcgatgtgagatttgagttgttttcaatacgactgtcctgagagcaaagtgaaaggagtttcttataatacaatacaaccagaaaccatgtttgttcat 13108  T
Q  501 ggttaatcctaaaaatcattgggtgaaagaactttaaatgtactctacctataattaat 559  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  13107 ggttaatcctaaaagtcattgagtgaaagaactttaaatgtactctacctataattaat 13049  T

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