View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8756_high_5 (Length: 480)
Name: NF8756_high_5
Description: NF8756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8756_high_5 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 45283040 - 45283501
Alignment:
| Q |
1 |
agggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctggaggatgtcggac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45283040 |
agggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctggaggatgtcggac |
45283139 |
T |
|
| Q |
101 |
aaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcaccatcatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283140 |
aaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcaccatcatttg |
45283239 |
T |
|
| Q |
201 |
catcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
45283240 |
catcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaattcctcatatcagcgatttggtcatgaacagcttgaatgttgtt |
45283339 |
T |
|
| Q |
301 |
gtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcaccattttcctttcca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45283340 |
gtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcaccattttcctttcca |
45283439 |
T |
|
| Q |
401 |
tgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgcctt |
462 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45283440 |
tactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgcctt |
45283501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 45294428 - 45294890
Alignment:
| Q |
1 |
agggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctggaggatgtcggac |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45294428 |
agggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgctggaggatgtcggac |
45294527 |
T |
|
| Q |
101 |
aaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcaccatcatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
45294528 |
aaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttcttctcaccgtcatttt |
45294627 |
T |
|
| Q |
201 |
catcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45294628 |
catcgtcaaatccttccatacaagcttgtctgtaagagataactgcactcaaccaattcctcatatcagcggtttggtcatgaacagcttgaatgttgct |
45294727 |
T |
|
| Q |
301 |
gtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcaccattttcctttcca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
45294728 |
gtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggtaccatcttcctttcca |
45294827 |
T |
|
| Q |
401 |
tgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttt |
463 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45294828 |
tactcagtggtgagcctgtcactcatgttaaaggccttaatgacattgtcagtggctgccttt |
45294890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 45303388 - 45303850
Alignment:
| Q |
1 |
agggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctggaggatgtcggac |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303388 |
agggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgctggaggatgtcggac |
45303487 |
T |
|
| Q |
101 |
aaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcaccatcatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
45303488 |
aaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttcttctcaccgtcatttt |
45303587 |
T |
|
| Q |
201 |
catcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45303588 |
catcgtcaaatccttccatacaagcttgtctgtaagagataactgcactcaaccaattcctcatatcagcggtttggtcatgaacagcttgaatgttgct |
45303687 |
T |
|
| Q |
301 |
gtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcaccattttcctttcca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
45303688 |
gtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggtaccatcttcctttcca |
45303787 |
T |
|
| Q |
401 |
tgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttt |
463 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45303788 |
tactcagtggtgagcctgtcactcatgttaaaggccttaatgacattgtcagtggctgccttt |
45303850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 45271266 - 45271727
Alignment:
| Q |
1 |
agggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctggaggatgtcggac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
45271266 |
agggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaagttgaattgctggaggatgtcagac |
45271365 |
T |
|
| Q |
101 |
aaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcaccatcatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| || || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45271366 |
aaaccagtcacaatgtcaagggcaacggctgtgaccttttgtacgctgtacaaactctgaacatggaattgctccttgatcttcttctcaccatcatttg |
45271465 |
T |
|
| Q |
201 |
catcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgtt |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
45271466 |
catcgtcaaatccttccatacaaccttgtttgtaagagataactgcactcaaccaattcctcatatcagcagtttggtcatgaacagcttcaatgttgtt |
45271565 |
T |
|
| Q |
301 |
gtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcaccattttcctttcca |
400 |
Q |
| |
|
|||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
45271566 |
gtcacgaacacagttgttggagaggtcaagactgtccaaagcgaattgcatcaagtctttgcagtcatcaagagccatcttggcaccatttttctttcca |
45271665 |
T |
|
| Q |
401 |
tgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgcctt |
462 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45271666 |
tactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcagtggctgcctt |
45271727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 45274799 - 45275260
Alignment:
| Q |
1 |
agggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctggaggatgtcggac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45274799 |
agggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgctggaggatgtcggac |
45274898 |
T |
|
| Q |
101 |
aaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcaccatcatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
45274899 |
aaaccagtcacaatgtcaagggcaaccgcggtgatcttttgtacgctgtccaaactctgaacatggaattgctctttgattttcttctcaccatcatttg |
45274998 |
T |
|
| Q |
201 |
catcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgtt |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| || || || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45274999 |
catcgtcaaatccttccatacaggcttgtctgtaggatatgactgcactcaaccaattcctcatatcagcagtttggtcatgaacagcttgaatgttgtt |
45275098 |
T |
|
| Q |
301 |
gtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcaccattttcctttcca |
400 |
Q |
| |
|
|||| || ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45275099 |
gtcactaagacaattgtttgagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcatcaagagccatcttggcaccattttcctttcca |
45275198 |
T |
|
| Q |
401 |
tgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgcctt |
462 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
45275199 |
tactcagtggtgagcctttcactcatgttaaaggcgttcatgacattgtcagtggctgcctt |
45275260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 300
Target Start/End: Original strand, 38588624 - 38588718
Alignment:
| Q |
206 |
tcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgtt |
300 |
Q |
| |
|
|||||||| ||||| || | |||| ||| |||||||| |||||||||||||| || | ||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
38588624 |
tcaaatccgtccatgcatgattgttggtatgagataacagcactcaaccaattcctaaaatcaggtgtttgatcatgaatggcttgaatgttgtt |
38588718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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