View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8756_low_10 (Length: 401)
Name: NF8756_low_10
Description: NF8756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8756_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 25320643 - 25320817
Alignment:
| Q |
1 |
ttaggttgtctcttcaaacttggatcgttcatatctacgtgatataagccataacttatttcatatccacccattaattcgaacgcatccaataagcacc |
100 |
Q |
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| T |
25320643 |
ttaggttgtctcttcaaacttggatcgttcatatctacgtgatataagccataacttatttcatatccacccattaattcgaacgcatccaataagcacc |
25320742 |
T |
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| Q |
101 |
atacaaaataacctttgacatttgatccactcctttcaatatgtcaagaataaaaggagagagtgcaaaaaagaagg |
177 |
Q |
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| T |
25320743 |
atacaaaataacctttgacatttgatccactcctttcaatatgtcaagaataaaag--gagagtgcaaaaaagaagg |
25320817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 234 - 387
Target Start/End: Original strand, 25320870 - 25321023
Alignment:
| Q |
234 |
aatatgaaggtttgtaacatcatagatataataaaaactttatagttggaaatcgaattagaagtaccttagtgcattagccatgctcccaatgtattca |
333 |
Q |
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| T |
25320870 |
aatatgaaggtttgtaacatcatagatataataaaaactttatagttggaaatcgaattagaagtaccttagtgcattagccatgctcccaatgtattca |
25320969 |
T |
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| Q |
334 |
tgcaagtatttcaccctagaccaatcatccaacgatgaattactagatgttttt |
387 |
Q |
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| T |
25320970 |
tgcaagtatttcaccctagaccaatcatccaacgatgaattactaaatgttttt |
25321023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 273 - 376
Target Start/End: Original strand, 25326661 - 25326764
Alignment:
| Q |
273 |
ttatagttggaaatcgaattagaagtaccttagtgcattagccatgctcccaatgtattcatgcaagtatttcaccctagaccaatcatccaacgatgaa |
372 |
Q |
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| T |
25326661 |
ttatatttgaaaatcaaagtagaagtaccttatttcattagctatggtctcaatgtatttatgcaagtacttcaccctagaccaatcattcaaggatgaa |
25326760 |
T |
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| Q |
373 |
ttac |
376 |
Q |
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|||| |
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| T |
25326761 |
ttac |
25326764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 25326450 - 25326588
Alignment:
| Q |
1 |
ttaggttgtctcttcaaacttggatcgttcatatctacgtgatataagccataacttatttcatatccacccattaattcgaacgcatccaataagcacc |
100 |
Q |
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||||||||||||||||| ||||||| |||||||||| || |||| ||| ||||| ||||||||||| || || ||| | | |||||| ||| ||| |
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| T |
25326450 |
ttaggttgtctcttcaagtttggatccttcatatctatgtagtatagaccaaaactttcttcatatccactcagtatttcaagcacatccatgaaggacc |
25326549 |
T |
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| Q |
101 |
atacaaaataacctttgacatttgatccactcctttcaa |
139 |
Q |
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| T |
25326550 |
atacaaaataaccttttatattcgatccactcctttcaa |
25326588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 5216373 - 5216486
Alignment:
| Q |
1 |
ttaggttgtctcttcaaacttggatcgttcatatctacgtgatataagccataacttatttcatatccacccattaattcgaacgcatccaataagcacc |
100 |
Q |
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|||||||| ||| |||| ||||||| | || ||||| || |||||||||||||||| |||||||||||| | ||| || ||| ||||||| ||| || |
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| T |
5216373 |
ttaggttgcctcctcaaggttggatcttccaaatctatgtaatataagccataacttgcttcatatccacctagtaactcaaacacatccaaaaaggccc |
5216472 |
T |
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| Q |
101 |
atacaaaataacct |
114 |
Q |
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||||||| |||||| |
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| T |
5216473 |
atacaaagtaacct |
5216486 |
T |
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