View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8756_low_13 (Length: 393)
Name: NF8756_low_13
Description: NF8756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8756_low_13 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 13 - 393
Target Start/End: Complemental strand, 10399762 - 10399381
Alignment:
| Q |
13 |
atgaacccaaatatcgtattcttttgtcacattacacaacaactttataggatcaaccgcatttgttgaagttgttccaatagtagcgcataaaaaacaa |
112 |
Q |
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| T |
10399762 |
atgaacccaaatatcgtattcttttgtcacattacacaacaactttataggatcaacggcatttgttgaagttgttccaatagtagcgcataaaaaataa |
10399663 |
T |
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| Q |
113 |
ggaaccaaaccattttcaacgtctaaaagaattgtcgaaagcaaagagtcgggggacaaagcaaataaatttgatccttttgtttttatgactctaaaat |
212 |
Q |
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| T |
10399662 |
ggaatcaaaccattgtcaacgtctaaaagaattgtcgaaagcaaagagtcgggggacaaagcaaataaatttgatccttttgtttttatgactctaaaat |
10399563 |
T |
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| Q |
213 |
tttctgaattaattccaacaatttgagaagctttttgaagtgcactatgtgtttgatcagaacaatacacaacaagttttccaatatcgtcctttccaat |
312 |
Q |
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| T |
10399562 |
tttctgaatgaattccaacaatttgagttgctttttgaagtgcactatgtgtttgatcagaacaatacacaacaagttttccaatattgtcctttccaat |
10399463 |
T |
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| Q |
313 |
ttgagaaagtt-ttttatctcttgcagcaactagtgtacacaaaatagcctcacaagttgtacctaataacacaccaccacc |
393 |
Q |
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| T |
10399462 |
ttgagaaagtttttttatctcttgcagcaactagggtacacaaaatagcctcacaagttgtacctaataacacaccaccacc |
10399381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 393
Target Start/End: Complemental strand, 11004523 - 11004454
Alignment:
| Q |
324 |
ttttatctcttgcagcaactagtgtacacaaaatagcctcacaagttgtacctaataacacaccaccacc |
393 |
Q |
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| T |
11004523 |
ttttatctctagcaacaactaaagttcccaaaataccttcacaagttgtacctaataaaacaccaccacc |
11004454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 393
Target Start/End: Complemental strand, 11014851 - 11014782
Alignment:
| Q |
324 |
ttttatctcttgcagcaactagtgtacacaaaatagcctcacaagttgtacctaataacacaccaccacc |
393 |
Q |
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| T |
11014851 |
ttttatctctagcaacaactaaagttcccaaaataccttcacaagttgtacctaataaaacaccaccacc |
11014782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 11004605 - 11004556
Alignment:
| Q |
242 |
gctttttgaagtgcactatgtgtttgatcagaacaatacacaacaagttt |
291 |
Q |
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| T |
11004605 |
gctttttgaactgcacaatgtgtttgatcagagccataaacaacaagttt |
11004556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 11014933 - 11014884
Alignment:
| Q |
242 |
gctttttgaagtgcactatgtgtttgatcagaacaatacacaacaagttt |
291 |
Q |
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| T |
11014933 |
gctttttgaactgcacaatgtgtttgatcagagccataaacaacaagttt |
11014884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 21197999 - 21197950
Alignment:
| Q |
242 |
gctttttgaagtgcactatgtgtttgatcagaacaatacacaacaagttt |
291 |
Q |
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| T |
21197999 |
gctttttgaactgcacaatgtgtttgatcagagccataaacaacaagttt |
21197950 |
T |
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