View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8756_low_14 (Length: 392)
Name: NF8756_low_14
Description: NF8756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8756_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 372
Target Start/End: Original strand, 10398865 - 10399221
Alignment:
| Q |
16 |
acatgtgagggatcatgcttttacatgcatccaaatacaatgaatacatcaagttccaaccctcttcaaagtgatccacaaaaaaccatgaatcctcttg |
115 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10398865 |
acatgtgagggatgatgcttttacatgcatccaaatacaatgaatacatcaagttccaaccctcctcaaagtgatccacaaaaaaccatgaatcctcttg |
10398964 |
T |
|
| Q |
116 |
accttgaagaattcaaaagacaaggatacattatgattgatttccttacagattattacaaaaacattgaaaactatcctgttttaagtaaagtagaacc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10398965 |
accttgaagaattcaaaagacaaggatacatgatgattgatttccttacagattattacaaaaacattgaaaactatcctgttttaagtaaagtagaacc |
10399064 |
T |
|
| Q |
216 |
tggttatcttgcaaaaatattaccatcttcagctccatttcaaccagaatcaattgaatcaatacttgaagatgttcaacaacatataatccctggtatc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10399065 |
tggttatcttgcaaaaatattaccatcttcagctccatttcaaccagaatcaattgaatcaatacttgaagatgttcaacaacatataatccctggtatc |
10399164 |
T |
|
| Q |
316 |
acacattggatgagtccaaattattatgcttacttccctagtagtggtagcatagca |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10399165 |
acacattggatgagtccaaattattatgcttacttccctagtagtggtagcatagca |
10399221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 21197448 - 21197540
Alignment:
| Q |
123 |
agaattcaaaagacaaggatacattatgattgatttccttacagattattacaaaaacattgaaaactatcctgttttaagtaaagtagaacc |
215 |
Q |
| |
|
||||||||| | |||||| |||| ||||||||||||||| | |||||||| |||||||| |||||||||||| ||||| |||||||||| |
|
|
| T |
21197448 |
agaattcaagaaacaaggtcacatgatgattgatttccttgctgattattatgaaaacatttcaaactatcctgtcctaagtcaagtagaacc |
21197540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 11004054 - 11004146
Alignment:
| Q |
123 |
agaattcaaaagacaaggatacattatgattgatttccttacagattattacaaaaacattgaaaactatcctgttttaagtaaagtagaacc |
215 |
Q |
| |
|
||||||||| | |||||| |||| || ||||||||||| | |||||||| ||||||| |||||||||||| |||||| |||||||||| |
|
|
| T |
11004054 |
agaattcaagaaacaaggtcacatgatcattgatttcctagctgattattatgaaaacatctcaaactatcctgtcttaagtcaagtagaacc |
11004146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 11014382 - 11014474
Alignment:
| Q |
123 |
agaattcaaaagacaaggatacattatgattgatttccttacagattattacaaaaacattgaaaactatcctgttttaagtaaagtagaacc |
215 |
Q |
| |
|
||||||||| | |||||| |||| || ||||||||||| | |||||||| ||||||| |||||||||||| |||||| |||||||||| |
|
|
| T |
11014382 |
agaattcaagaaacaaggtcacatgatcattgatttcctagctgattattatgaaaacatctcaaactatcctgtcttaagtcaagtagaacc |
11014474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University