View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8756_low_18 (Length: 340)
Name: NF8756_low_18
Description: NF8756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8756_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 1038349 - 1038653
Alignment:
| Q |
1 |
acagagagagtaccatgactaaatctggcatgatatgaatttggaaaggtgatgacaaactctcctggcttttgcaccaccaccttgtaaaccggcacat |
100 |
Q |
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| T |
1038349 |
acagagagagtaccatgactaaatccggcatgatatgaatttggaaaggtgatgacaaactctcctggcttttgcaccaccaccttgtaaaccggcacat |
1038448 |
T |
|
| Q |
101 |
tatgttctaacaagacatcaggagatgcttatcaggagagaacatggttgttttttgtgcaagaaattggaatgcaccattttctccatgttctattaag |
200 |
Q |
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| T |
1038449 |
tatgttctaacaagacatca--------------ggagagaacatggttgttttttgtgcaagaaattggaatgcaccattttctccatgttctattaag |
1038534 |
T |
|
| Q |
201 |
attttgttgcaatacacatgatccaagacagtcttttcaaattgagaggcagcagaactaggcacaccaatgttaaacaatatttaaagcaatgttaaga |
300 |
Q |
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| T |
1038535 |
attttgttgcaatacacatgatccaagacagtcttttcaaattgagaggctgcagaactaggcacaccaatgttaaacaatatttaaagcaatgttaaga |
1038634 |
T |
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| Q |
301 |
ataaagataagatacctgt |
319 |
Q |
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| T |
1038635 |
ataaagataagatacctgt |
1038653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 3 - 265
Target Start/End: Complemental strand, 14140145 - 14139900
Alignment:
| Q |
3 |
agagagagtaccatgactaaatctggcatgatatgaatttggaaaggtgatgacaaactctcctggcttttgcaccaccaccttgtaaaccggcacatta |
102 |
Q |
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| T |
14140145 |
agagagagtaccatgactaaatccagcatgatatgaattaggaaaggtgatgacaaactctcctggcttttgcaccgcc---ttgtaaaccggcacatca |
14140049 |
T |
|
| Q |
103 |
tgttctaacaagacatcaggagatgcttatcaggagagaacatggttgttttttgtgcaagaaattggaatgcaccattttctccatgttctattaagat |
202 |
Q |
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| T |
14140048 |
tgttgtaacaagacattaggagg--------------gaacatggttgttttttgtgcaagaaattggaatgcaccattctctccatgttctgctaagat |
14139963 |
T |
|
| Q |
203 |
tttgttgcaatacacatgatccaagacagtcttttcaaattgagaggcagcagaactaggcac |
265 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
14139962 |
ttttttgcaatacacatgattcaagacagtcttttcaaattgagaggctgcagagctaggcac |
14139900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 14155792 - 14155551
Alignment:
| Q |
11 |
taccatgactaaatctggcatgatatgaatttggaaaggtgatgacaaactctcctggcttttgcaccaccaccttgtaaaccggcacattatgttctaa |
110 |
Q |
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| T |
14155792 |
taccatgactaaatccagcatgatatgaatttggaaaggtgataacaaactctcctagcttttgcaccgcc---ttgtaaaccggcacattatgttctaa |
14155696 |
T |
|
| Q |
111 |
caagacatcaggagatgcttatcaggagagaacatggttgttttttgtgcaagaaattggaatgcaccattttctccatgttctattaagattttgttgc |
210 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||| |||||||| |
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| T |
14155695 |
caagacatcaggaga--------------gaacatggttgttttttgtgcaagaaattggaatgccccattctctccatgttctatcaagactttgttgc |
14155610 |
T |
|
| Q |
211 |
aatacacatgatccaagacagtcttttcaaattgagaggcagcagaactaggcacacca |
269 |
Q |
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|||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||||| |
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| T |
14155609 |
aataaacatgatccaagacagtcttttcaatttgagaggttgcagaaccaggcacacca |
14155551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 14155460 - 14155428
Alignment:
| Q |
268 |
caatgttaaacaatatttaaagcaatgttaaga |
300 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
14155460 |
caatgttaaacaatatttgaagcaatgttaaga |
14155428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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