View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8756_low_22 (Length: 294)
Name: NF8756_low_22
Description: NF8756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8756_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 30386228 - 30386488
Alignment:
| Q |
12 |
gagatgaacaaaggattaaggttgttgataatgatgtcacaccagattttggttgggtgaatgagctgctgatgtagatcatacaatgacaacaaagctg |
111 |
Q |
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| T |
30386228 |
gagatgaacaaaggattaaggttgttgataatgatgtcacaccagattttggttgggtgaatgagctgctgatgtagatcatacaatgacaacaaagctg |
30386327 |
T |
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| Q |
112 |
ctgatgttgatgataattatgtgaattcatggtgatttattattttagtaattaatttgagtnnnnnnnnnnggtaagtaattaagtgtagatatggtta |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30386328 |
ctgatgttgatgataattatgtgaattcatggtgatttattatttcagtaattaatttgagtaaaaaaaaaa-gtaagtaattaagtgtagatatggtta |
30386426 |
T |
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| Q |
212 |
tgtgatcatgtgactaacatatgatccttaattggcttgcttagcctctatttccaattgta |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30386427 |
tgtgatcatgtgactaacatatgatccttaattggcttgcttagcctctatttccaattgta |
30386488 |
T |
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