View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8756_low_23 (Length: 293)
Name: NF8756_low_23
Description: NF8756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8756_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 27693439 - 27693164
Alignment:
| Q |
1 |
tttacttaaatgcatttcaatactttattttgagcacatttatttacttaattattgaaatatatatgcattactctgtctcctgaaacaccattgaatt |
100 |
Q |
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| T |
27693439 |
tttacttaaatgcatttcaatactttattttgagcacatttatttacttaattgttgaaatatacatgcattactttgtctcctgaaacaccattgaatt |
27693340 |
T |
|
| Q |
101 |
acaacttacaagaaattcattaggatattcaacattctctgtggatgatcaccaaactagtagtatattgtattataccgtattatggattagaataata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27693339 |
acaacttacaagaaattcattaggatattcaacattctctgtggatgatcaccaaactagtagtatattgtattataccgtattatggattagaataata |
27693240 |
T |
|
| Q |
201 |
aatctgtttattaataattggtatatttgcacagtgctctcatggactgctgtaaaatttgtttttggctcaccat |
276 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27693239 |
aatctttttattaataattggtatatttgcacagtgctctcatggactgctgtaaaatttgtttttgggtcaccat |
27693164 |
T |
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