View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8756_low_28 (Length: 239)
Name: NF8756_low_28
Description: NF8756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8756_low_28 |
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| [»] scaffold0170 (1 HSPs) |
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Alignment Details
Target: scaffold0170 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0170
Description:
Target: scaffold0170; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 13043 - 12822
Alignment:
| Q |
1 |
ttacttgaaactaaattttgttagaataatagggtactaggtaatagttgtttagttttgttgtgttaactcataatttcaaaataagccatgaacttaa |
100 |
Q |
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| T |
13043 |
ttacttgaaactaaattttgttagaataataggtt-ctaggtaatagttgtttagttttgttgtgttaactcataatttcaaaataagccatgagcttaa |
12945 |
T |
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| Q |
101 |
atttattgtttaaggctaattgaagcactaagccataagtttcttatgctcgataattttttctacaggaaacaaaagtgatccagatacaagaagaaac |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12944 |
atttattgtttaaggctagttgaagcactaagccataagtttcttatgctcgataattttttctacaggaaacaaaagtgatccagatacaagaagaaat |
12845 |
T |
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| Q |
201 |
aaatgatttacaacatgttcatg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
12844 |
aaatgatttacaacatgttcatg |
12822 |
T |
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