View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8756_low_29 (Length: 238)
Name: NF8756_low_29
Description: NF8756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8756_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 36496045 - 36496255
Alignment:
| Q |
10 |
gagtttggtgttgagtctctgtttcctctttctttctgacccagcgttctttgataggaacacttttgtgccatcttcattatagtactttttgctcgat |
109 |
Q |
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| T |
36496045 |
gagtttggtattgagtctctgtttcctctttctttctgacccagcgttctttgataggaacacttttgtgccatcttcattatagtactttttgctcgat |
36496144 |
T |
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| Q |
110 |
tttctcttattgctgtcattttcagcattgaaacccaaatcttctagagacaaacttagtctgatatcatgttcttgttccattttgggtgttgggaatg |
209 |
Q |
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| T |
36496145 |
tttctcttattgctgtcattttcagcattgaaacccaaatcttctagagacaaacttagtctgatatcatgttcttgttccattttgggtgttgggaatg |
36496244 |
T |
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| Q |
210 |
aagaaacaagt |
220 |
Q |
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| T |
36496245 |
aagaaacaagt |
36496255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 220
Target Start/End: Original strand, 36467769 - 36467872
Alignment:
| Q |
117 |
tattgctgtcattttcagcattgaaacccaaatcttctagagacaaacttagtctgatatcatgttcttgttccattttgggtgttgggaatgaagaaac |
216 |
Q |
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| T |
36467769 |
tattgctaccattttcagcattgaaacctaactcttccatagacacacatagtctattgttatttacttgttccattttgtgtgttaggaatgaagaaac |
36467868 |
T |
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| Q |
217 |
aagt |
220 |
Q |
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| T |
36467869 |
aagt |
36467872 |
T |
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