View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8756_low_9 (Length: 457)
Name: NF8756_low_9
Description: NF8756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8756_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 15 - 439
Target Start/End: Complemental strand, 8154111 - 8153687
Alignment:
| Q |
15 |
catatatctatccaaaacatctctcgtatatcaaatatttagttcattcacggactaatactcacacttgaactcaacacatgaagtagatgtttctaga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8154111 |
catatatctatccaaaacatctctcgtatatcaaatatttagttcattcatggactaatactcacacttgaactcaacacatgaagtagatgtttctaga |
8154012 |
T |
|
| Q |
115 |
tatgaggaaggtgaagaggaagtttgaagtgaagttgtgatgccggcgagcgatccgccacgccgtgccaacagattccacctttacaataagacatggt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8154011 |
tatgaggaaggtgaagaggaagtttgaagtgaagttgtgatgccggcgagcgatccgccacgccgtgccaacagattccacctttacaataagacatggt |
8153912 |
T |
|
| Q |
215 |
attgtgttgggaagtacgaggatgttggtcgacaaaaacacacttactaatcttccgagacaaatcccacattaaagttgccaccaaaatcaaagccacc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8153911 |
attgtgttgggaagtacgaggatgttggtcgacaaaaacacacttactaatcttccgagacaaatcccacattaaagttgccaccaaaatcaaagccacc |
8153812 |
T |
|
| Q |
315 |
aacgttgtagacacagtcacaacaaacacaccactaaatcttcgtccatataaaacttcataagccttaacaaatgatgtaactgccacatagattattg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8153811 |
aacgttgtagacacagtcacaacaaacacaccactaaatcttcgtccatataaaacttcataagccttaacaaatgatgtaactgccacatagattattg |
8153712 |
T |
|
| Q |
415 |
taagattactcgctactacatcaca |
439 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
8153711 |
taaggttactcgctactacatcaca |
8153687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University