View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8757_high_11 (Length: 329)

Name: NF8757_high_11
Description: NF8757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8757_high_11
NF8757_high_11
[»] chr8 (2 HSPs)
chr8 (20-317)||(40722996-40723291)
chr8 (77-109)||(8210168-8210200)
[»] chr6 (1 HSPs)
chr6 (81-129)||(8053178-8053226)
[»] chr3 (3 HSPs)
chr3 (74-119)||(21195335-21195380)
chr3 (77-123)||(15502695-15502741)
chr3 (77-123)||(15005810-15005856)
[»] chr1 (3 HSPs)
chr1 (74-123)||(11803421-11803470)
chr1 (80-123)||(38756128-38756171)
chr1 (77-129)||(35112148-35112200)
[»] chr5 (6 HSPs)
chr5 (81-117)||(40555599-40555635)
chr5 (77-123)||(28782688-28782734)
chr5 (76-109)||(28992951-28992984)
chr5 (76-109)||(28996231-28996264)
chr5 (74-123)||(32522755-32522804)
chr5 (74-102)||(19087031-19087059)
[»] chr4 (2 HSPs)
chr4 (74-129)||(45257659-45257714)
chr4 (77-129)||(4867828-4867880)
[»] scaffold2122 (1 HSPs)
scaffold2122 (76-109)||(676-709)
[»] chr7 (2 HSPs)
chr7 (80-112)||(32761501-32761533)
chr7 (77-129)||(33474337-33474389)
[»] chr2 (1 HSPs)
chr2 (85-129)||(34512644-34512688)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 317
Target Start/End: Original strand, 40722996 - 40723291
Alignment:
Q  20 ttagttgtcaagagaacataaataaaaatatcacgttgagaagtagtnnnnnnntggtgaattcaactttttaaaagttaaaaatttgttattttcaata 119  Q
    |||||| | ||||||||| ||||| |||||||||||||| |||||||       ||||||||| || |||||||||||||||||||||||||||||||||    
T  40722996 ttagtttttaagagaacaaaaatagaaatatcacgttgaaaagtagtaaaaaa-tggtgaatttaattttttaaaagttaaaaatttgttattttcaata 40723094  T
Q  120 caaagttactgnnnnnnngtttccttaacgaatacactgaggacacttattaaaaagaccttaaaataatactcatcggttggatatttctccaaatcta 219  Q
    ||||| |||||       ||||||||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40723095 caaagctactgtttttt-gtttccttaacaaatacaccgaggacacttgttaaaaagactttaaaataatactcatcggttggatatttctccaaatcta 40723193  T
Q  220 tatattatacacttttaccacgtagaaatattagttaacaacaaaatacatttcaacaataactcttccttcaaatgaaaatatttctccaccaacac 317  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40723194 tatattatacacttttaccacgcagaaatattagttaacgacaaaatacatttcaacaataactcttccttcaaatgaaaatatttctccaccaacac 40723291  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 8210200 - 8210168
Alignment:
Q  77 tgaattcaactttttaaaagttaaaaatttgtt 109  Q
    ||||||||||||||||||||||||||| |||||    
T  8210200 tgaattcaactttttaaaagttaaaaaattgtt 8210168  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 8053226 - 8053178
Alignment:
Q  81 ttcaactttttaaaagttaaaaatttgttattttcaatacaaagttact 129  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  8053226 ttcaactttttaaaagttaaaaaattgttatttccaatacaaagttact 8053178  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 21195335 - 21195380
Alignment:
Q  74 tggtgaattcaactttttaaaagttaaaaatttgttattttcaata 119  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||    
T  21195335 tggtgaattcaactttttaaaagttaaaaaattgttatttccaata 21195380  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 15502695 - 15502741
Alignment:
Q  77 tgaattcaactttttaaaagttaaaaatttgttattttcaatacaaa 123  Q
    ||||||||||||||||||||||||||| |||| |||| |||||||||    
T  15502695 tgaattcaactttttaaaagttaaaaaattgtaatttccaatacaaa 15502741  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 15005856 - 15005810
Alignment:
Q  77 tgaattcaactttttaaaagttaaaaatttgttattttcaatacaaa 123  Q
    ||||||||||||| ||||||||||||| |||| ||||||||| ||||    
T  15005856 tgaattcaactttgtaaaagttaaaaaattgtaattttcaatgcaaa 15005810  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 11803421 - 11803470
Alignment:
Q  74 tggtgaattcaactttttaaaagttaaaaatttgttattttcaatacaaa 123  Q
    |||||||||||||||||||||||||||||  ||||||||| |||||||||    
T  11803421 tggtgaattcaactttttaaaagttaaaacattgttatttccaatacaaa 11803470  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 38756128 - 38756171
Alignment:
Q  80 attcaactttttaaaagttaaaaatttgttattttcaatacaaa 123  Q
    ||||||||||||| ||||| |||| |||||||||||||||||||    
T  38756128 attcaactttttagaagtttaaaaattgttattttcaatacaaa 38756171  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 35112148 - 35112200
Alignment:
Q  77 tgaattcaactttttaaaagttaaaaatttgttattttcaatacaaagttact 129  Q
    ||||||||  ||||||||||||||||| |||||||||  ||| ||||||||||    
T  35112148 tgaattcagttttttaaaagttaaaaaattgttatttctaatgcaaagttact 35112200  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 40555635 - 40555599
Alignment:
Q  81 ttcaactttttaaaagttaaaaatttgttattttcaa 117  Q
    ||||||||||||||||| |||||||||||||||||||    
T  40555635 ttcaactttttaaaagtcaaaaatttgttattttcaa 40555599  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 28782734 - 28782688
Alignment:
Q  77 tgaattcaactttttaaaagttaaaaatttgttattttcaatacaaa 123  Q
    |||||||||| |||||||||| ||||| |||| ||||||||||||||    
T  28782734 tgaattcaacattttaaaagtaaaaaagttgtaattttcaatacaaa 28782688  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 28992984 - 28992951
Alignment:
Q  76 gtgaattcaactttttaaaagttaaaaatttgtt 109  Q
    |||||||||||||||||||||||||||| |||||    
T  28992984 gtgaattcaactttttaaaagttaaaaaattgtt 28992951  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 28996264 - 28996231
Alignment:
Q  76 gtgaattcaactttttaaaagttaaaaatttgtt 109  Q
    |||||||||||||||||||||||||||| |||||    
T  28996264 gtgaattcaactttttaaaagttaaaaaattgtt 28996231  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 32522755 - 32522804
Alignment:
Q  74 tggtgaattcaactttttaaaagttaaaaatttgttattttcaatacaaa 123  Q
    |||||||||||||||||||||| ||||||| || |||||| |||| ||||    
T  32522755 tggtgaattcaactttttaaaatttaaaaaattattatttccaatgcaaa 32522804  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 102
Target Start/End: Complemental strand, 19087059 - 19087031
Alignment:
Q  74 tggtgaattcaactttttaaaagttaaaa 102  Q
    |||||||||||||||||||||||||||||    
T  19087059 tggtgaattcaactttttaaaagttaaaa 19087031  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 45257659 - 45257714
Alignment:
Q  74 tggtgaattcaactttttaaaagttaaaaatttgttattttcaatacaaagttact 129  Q
    ||||||||||||||||||||||| |||||| || |||||| |||| ||||| ||||    
T  45257659 tggtgaattcaactttttaaaagctaaaaaattattatttccaatgcaaagctact 45257714  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 4867828 - 4867880
Alignment:
Q  77 tgaattcaactttttaaaagttaaaaatttgttattttcaatacaaagttact 129  Q
    ||||||||| ||||||||||| ||||| |||| |||| ||||||||| |||||    
T  4867828 tgaattcaaatttttaaaagtcaaaaagttgtaatttccaatacaaaattact 4867880  T

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Target: scaffold2122 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold2122
Description:

Target: scaffold2122; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 676 - 709
Alignment:
Q  76 gtgaattcaactttttaaaagttaaaaatttgtt 109  Q
    |||||||||||||||||||||||||||| |||||    
T  676 gtgaattcaactttttaaaagttaaaaaattgtt 709  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 32761533 - 32761501
Alignment:
Q  80 attcaactttttaaaagttaaaaatttgttatt 112  Q
    |||||||||||||||||| ||||||||||||||    
T  32761533 attcaactttttaaaagtgaaaaatttgttatt 32761501  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 33474389 - 33474337
Alignment:
Q  77 tgaattcaactttttaaaagttaaaaatttgttattttcaatacaaagttact 129  Q
    ||||||||||||| ||||||| ||||| |||| ||||||||| |||| |||||    
T  33474389 tgaattcaactttctaaaagtcaaaaagttgtaattttcaatgcaaaattact 33474337  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 34512688 - 34512644
Alignment:
Q  85 actttttaaaagttaaaaatttgttattttcaatacaaagttact 129  Q
    ||||||||||||||||||| ||||||  ||||||||||| |||||    
T  34512688 actttttaaaagttaaaaaattgttaaattcaatacaaacttact 34512644  T

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