View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8757_high_14 (Length: 258)
Name: NF8757_high_14
Description: NF8757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8757_high_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 7500412 - 7500178
Alignment:
| Q |
17 |
cattgatgctttttgaacataatgaacttgttatttctgtgtcattacatttgctttcaaagtgagaaagatcggtactattaaatatacctaaaatgga |
116 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7500412 |
cattgatgcttcttgaacataatgaacttgttgtttctgtgtaattacatttgctttcaaagtgagaaagatcggtactattaaatatacctaaaatgga |
7500313 |
T |
|
| Q |
117 |
gtccattcaaagtgagtaagttctttatctctagttactttgtttgtggctgtagttgttgcttccttcacaaccaatcctccaattgttcgtagtgtct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7500312 |
gtccattcaaagtgagtaagttctttatctctagttactttgtttgtggctgtagttgttgcttccttcacaaccaatcctccaattgttcgtagtgtct |
7500213 |
T |
|
| Q |
217 |
tgatcttgctctagtcacatagtctttaccaccat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7500212 |
tgatcttgctctagtcacatagtctttaccaccat |
7500178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 2153432 - 2153371
Alignment:
| Q |
190 |
ccaatcctccaattgttcgtagtgtcttgatcttgctctagtcacatagtctttaccaccat |
251 |
Q |
| |
|
||||||||||||||||| |||||| || |||||| || | |||||||||||||||||||||| |
|
|
| T |
2153432 |
ccaatcctccaattgtttgtagtgactagatctttctgttgtcacatagtctttaccaccat |
2153371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University