View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8757_high_17 (Length: 237)

Name: NF8757_high_17
Description: NF8757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8757_high_17
NF8757_high_17
[»] chr5 (2 HSPs)
chr5 (1-84)||(39471649-39471732)
chr5 (161-222)||(39471511-39471572)
[»] chr1 (1 HSPs)
chr1 (9-78)||(29310324-29310391)


Alignment Details
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 39471732 - 39471649
Alignment:
Q  1 ttttttcaattagattttgggttgttttggagctttgtataccagtctcttttacaagatcctctctggactaagtctctaaca 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39471732 ttttttcaattagattttgggttgttttggagctttgtataccagtctcttttacaagatcctctctggactaagtctctaaca 39471649  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 39471572 - 39471511
Alignment:
Q  161 gagttagtttttcacctgataagattatatttggaaaataacacaaatataagtaacataaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39471572 gagttagtttttcacctgataagattatatttggaaaataacacaaatataagaaacataaa 39471511  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 29310324 - 29310391
Alignment:
Q  9 attagattttgggttgttttggagctttgtataccagtctcttttacaagatcctctctggactaagtct 78  Q
    ||||||| |||| || ||||||||||||||||||||| || ||||||||||||  |||||||||||||||    
T  29310324 attagatattggattattttggagctttgtataccagacttttttacaagatc--ctctggactaagtct 29310391  T

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