View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8757_high_3 (Length: 448)
Name: NF8757_high_3
Description: NF8757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8757_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 6965089 - 6964653
Alignment:
| Q |
1 |
aaaaacccaaataaagagtaaatattaatgttattaaaatattaaaactaatagtaacagcagaatctaacaattgaatattatgaggcccatatcccta |
100 |
Q |
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| T |
6965089 |
aaaaacccaaataaagagtaaatattaatgttattaaaatattaaaactaatagtaatagcagaatctaacaattgaatattatgaggcccatatcccta |
6964990 |
T |
|
| Q |
101 |
gtgaagaagagaaagacatatgaagaatgaatgaaatctataacatctggaccacctcctctaacaaattaaagtcaacaaatttatcaa----atatga |
196 |
Q |
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| T |
6964989 |
gtcaagaagagaaagacatatgaagaatgaatgaaatctataacatctggaccacctcctctaacaaattaaagtcaacaaatttatcaatcaaatatga |
6964890 |
T |
|
| Q |
197 |
atcaagaaatggattctgtgtgaattgaaaagatacaagataagaaagttattgaattaaacaagaaagtgaaaggaacatacgagaaagaagtgtagga |
296 |
Q |
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| T |
6964889 |
atcaagaaatggattctgtgtgaattgaaaagatacaagataagaaagttattgaattaaacaagaaagtgaaaggaacatacgagaaagaagtgtagga |
6964790 |
T |
|
| Q |
297 |
gtagaaaccaacatccaaacacatgaaacaaagagaagcagaagagaaaacaatttgtcccaaacgaagagttaagctagcgcttgttccaaacgctcct |
396 |
Q |
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| T |
6964789 |
gtagaaaccaacatccaaacacatgaaacaaagagaagcagaagagaaaacaatttgtcccaaacgaagagttaagctagcgcttgttccaaacgctcct |
6964690 |
T |
|
| Q |
397 |
ggaagttcctccatcatagcctagcataataatatat |
433 |
Q |
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| T |
6964689 |
ggaagttcctccatcatagcctagcataataatatat |
6964653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 410
Target Start/End: Original strand, 33584943 - 33585055
Alignment:
| Q |
298 |
tagaaaccaacatccaaacacatgaaacaaagagaagcagaagagaaaacaatttgtcccaaacgaagagttaagctagcgcttgttccaaacgctcctg |
397 |
Q |
| |
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|||||| ||||||||||||||||||| ||||||||||||| || ||||| |||| ||||| | ||||| ||||| | ||||||||| ||| | |||| |
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| T |
33584943 |
tagaaatcaacatccaaacacatgaagaaaagagaagcagaggaaaaaacggtttggcccaatctaagagcaaagctggagcttgttcctaacacccctg |
33585042 |
T |
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| Q |
398 |
gaagttcctccat |
410 |
Q |
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| T |
33585043 |
gcaattcctccat |
33585055 |
T |
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