View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8757_high_5 (Length: 402)
Name: NF8757_high_5
Description: NF8757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8757_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 7152718 - 7153106
Alignment:
| Q |
1 |
aagctctggaattgtgctacactatacacaaagatattaaaagctctcgaccttgatgatctattcatcatagataaagacaaagctctgcaacaagatt |
100 |
Q |
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| T |
7152718 |
aagctctggacttgtgctacactatacacaaagatattaaaagctctcgaccttgatgatctattcatcatagataaagacagggctctgcaacaagatt |
7152817 |
T |
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| Q |
101 |
-aagtcaactttgtggtagtcaatactatgt---gtttacaagcttttgaagtgagatcaatatatagtaagcaattgactcaaagaatcatcatgcatg |
196 |
Q |
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| T |
7152818 |
caggtcaactatgtggtagtcaatactatgtatattgtacaagcctttgaagtgagatca--atatagtaagcaattgactcaaagaatcatcatgcatg |
7152915 |
T |
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| Q |
197 |
tacac-acgactcttagataagaaatgatagtttattctgactcaagcaagagagtaaagctccataattgacatcattaatgaaattgaatgactgatg |
295 |
Q |
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| T |
7152916 |
tacgcaacgactcttagataagaaaggatagtttattctgactcaagcaagagagtaaagctccataattgacatcattaatgaaattgaatgactgatg |
7153015 |
T |
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| Q |
296 |
tgttgaccacggttct-ccaagatatcttaacatttatactatcattcaaagacaaagatttcttcaacaacgctaatatacttcatctct |
385 |
Q |
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| T |
7153016 |
tgttgaccacgattctcccaagatatcttaacatttatactatcattcaaagacaaagatttcttcaacaacgctaatatacttcatctct |
7153106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 365
Target Start/End: Complemental strand, 9021488 - 9021399
Alignment:
| Q |
276 |
atgaaattgaatgactgatgtgttgaccacggttctccaagatatcttaacatttatactatcattcaaagacaaagatttcttcaacaa |
365 |
Q |
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| T |
9021488 |
atgacattgaatgactgaagtgctgacctcaaatctccaagatatcttagcattcattcaaacatccaaagataatgatttcttcaacaa |
9021399 |
T |
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