View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8757_high_6 (Length: 392)
Name: NF8757_high_6
Description: NF8757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8757_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 41481397 - 41481761
Alignment:
| Q |
18 |
gcaagaaacaaaagctacgctaatagaaacaaggacatgaagattggggattacatnnnnnnngtgtttcaagattatgttgatagagattggttatgtg |
117 |
Q |
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| T |
41481397 |
gcaagaaacaaaagctacgctaatagaaacaaggacatgaagattggggattgcataaaaaaagtgtttcaagattatgttgatagagattggttatgtg |
41481496 |
T |
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| Q |
118 |
aactaaatcataacatttgctactagaaacttatcaaatagaaaccaaaatcatgttgaagaa---tatgcgtccctctatattttactccacttgttag |
214 |
Q |
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| T |
41481497 |
aactaaatcataacatttgctactagaaacttatcaaatagaaaccaaaatcatgttgaagaagaatatgtgtccctctatattttactccacttgttag |
41481596 |
T |
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| Q |
215 |
aattttttcaatgtattctacattttgttggcttatgtgattgttgttagtcactaaatttaatttgggcaacaattaaaaggtatttcgnnnnnnngcc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||| ||| |
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| T |
41481597 |
aattttttcaatgtattctacattttgttggcttatgtgattgttgttagtcaataaattcaatttgggcaacaattaaaaggtatatcgaaaaaaagcc |
41481696 |
T |
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| Q |
315 |
aacaggatttattaaatttaagctgtagcgcaaatttatccaaaatggatatactattccactct |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41481697 |
aacaggatttattaaatttaagctgtagcgcaaatttatccaaaatggatatactattccactct |
41481761 |
T |
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