View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8757_low_1 (Length: 641)
Name: NF8757_low_1
Description: NF8757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8757_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 44 - 622
Target Start/End: Original strand, 44046467 - 44047045
Alignment:
| Q |
44 |
cccttaggttccctcctggttcggagttaatcccatttgagtcgtgtaggacactaaatatggatacttctttcaactaaaattcaaactttaatttgtc |
143 |
Q |
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| T |
44046467 |
cccttaggttccctcctggttcggagttaatcccatttgagtcgtgtaggacactaaatatgaatacttctttcaactaaaattcaaactttaatttgtc |
44046566 |
T |
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| Q |
144 |
attttgcgggagtctagcccttttcgctagatcaaactcccatttgtataactcaaaattctatcaagttgaaaaatgtcacaatcacgtcttgcattaa |
243 |
Q |
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| T |
44046567 |
actttgcgggagtctagcccttttcgctagatcaaactcccatttgtataactcaaaattctatcaagttgaaaaatgtcacaatcacgtcttgcattaa |
44046666 |
T |
|
| Q |
244 |
gtttatgcatatcatacagtgacagaaattatattatacattttaaatatatggttatgaaactgagtggcaccttctcttttgaaaaggaaaccgggac |
343 |
Q |
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| T |
44046667 |
gtttatgcatatcatacagtgacagaaattatattatacattttaaatatatggttatgaaactgagtggcaccttctcttttgaaaaggaaaccgggac |
44046766 |
T |
|
| Q |
344 |
cgtggttgtggactagaccttccagttccactgccacgaatactgttaatacggaatagagcattgaactttcttaatttttgggcaaatgatttgaaga |
443 |
Q |
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| T |
44046767 |
cgtggttgtggactagacctcccagttccactgccacgaatactgttaatacggaatagagcattgaactttcttaatttttgggcaaatgatttgaaga |
44046866 |
T |
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| Q |
444 |
atttgcgtgcaggatgtgtcttcacaagctcttgcttcatagaaacatgatctttctccaaatcattcaacctcattctcattcttgttacttcaagctt |
543 |
Q |
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| T |
44046867 |
atttgcgtgcaggatgtgtcttcacaagctcttgcttcatagaaacatgatctttctccaaatcattcaacctcattctcattcttgttacttcaagctt |
44046966 |
T |
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| Q |
544 |
cagctctcgattctctcttcttaccgatgcatagttatctctaggagaaattgctccacttcctataccactccctgat |
622 |
Q |
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| T |
44046967 |
cagctctcgattctctcttcttaccgatgcatagttatctctaggagaaattgctccacttcctataccactccctgat |
44047045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 431 - 621
Target Start/End: Complemental strand, 39825131 - 39824941
Alignment:
| Q |
431 |
aatgatttgaagaatttgcgtgcaggatgtgtcttcacaagctcttgcttcatagaaacatgatctttctccaaatcattcaacctcattctcattcttg |
530 |
Q |
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||||||||||||| ||| |||||||| | ||| ||||||||||| |||||||||||||||||||||||||||||| | | |||||||||||||||| |
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| T |
39825131 |
aatgatttgaagagtttattagcaggatgagacttaacaagctcttgtttcatagaaacatgatctttctccaaatcagtgagtctcattctcattcttg |
39825032 |
T |
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| Q |
531 |
ttacttcaagcttcagctctcgattctctcttcttaccgatgcatagttatctctaggagaaattgctccacttcctataccactccctga |
621 |
Q |
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| T |
39825031 |
ttacttcgagtttcagctcacggttctctcttctaactgatgcatagttatctctaggtgacattgctccacttcctgcaccactgcctga |
39824941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 10436496 - 10436422
Alignment:
| Q |
92 |
ggacactaaatatggatacttctttcaactaaaattcaaactttaatttgtcattttgcgggagtctagcccttt |
166 |
Q |
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||||| ||||||| ||||||||||||| | |||||| |||||||||| ||||| ||| |||||| |||| |||| |
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| T |
10436496 |
ggacattaaatatagatacttctttcagccaaaatttgaactttaattcgtcatgttgtgggagtttagctcttt |
10436422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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