View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8757_low_10 (Length: 386)
Name: NF8757_low_10
Description: NF8757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8757_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 17348317 - 17347962
Alignment:
| Q |
18 |
agaaggtaccattttgtttcaaggtgaatctgtagcttcccttgcgagtgaaaattcttgcagtgtgatacaaagtagccaaatttggagatgggttttg |
117 |
Q |
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| T |
17348317 |
agaaggtaccattttgtttcaaggtgaatctgtagcttcccttactagtgaaaattcttgcagtgtgatacaaagtagccaaatttggagatgggttttg |
17348218 |
T |
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| Q |
118 |
gttggttaaggaaattgatttctctgcagagagaaaatttgagcctaggttggtagaatcatcacctatgaaaagcctattgaaaatggtaacattgtta |
217 |
Q |
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| T |
17348217 |
gttggttaaggaaattgatttctctgcagagagaaaatttgagcctaggttggtagaatcatcacctatgaaaagcctattgaaaatggtagcattgtta |
17348118 |
T |
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| Q |
218 |
tttgatccacagttgagaaggtagttatctgtaggagtgaaagaagataatgaaaagggaatgaaaatgagaagaatgaaatgtataatcagattatgag |
317 |
Q |
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| T |
17348117 |
tttgatccacagttgagaaggtagttatctgtaggagtgaaagaagatgatgaaaatggaatgaaaatgagaaaaatgaaatgtataatcagattatgag |
17348018 |
T |
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| Q |
318 |
tgtccatggaagaagaaaaaagctatggtttttgaaactcacatcaagaataagta |
373 |
Q |
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| T |
17348017 |
tgtccatggaagaagaaaaaagctatggtttttgaaactcacatcaagaataagta |
17347962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 175
Target Start/End: Complemental strand, 17363763 - 17363661
Alignment:
| Q |
73 |
tcttgcagtgtgatacaaagtagccaaatttggagatgggttttggttggttaaggaaattgatttctctgcagagagaaaatttgagcctaggttggta |
172 |
Q |
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| T |
17363763 |
tcttgcagtatgataccaagtagataattttggagatgggtcttggttggttaaggaaattgatttgtctgaagatagaaaagttgaaccttggttagta |
17363664 |
T |
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| Q |
173 |
gaa |
175 |
Q |
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| T |
17363663 |
gaa |
17363661 |
T |
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