View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8757_low_14 (Length: 348)
Name: NF8757_low_14
Description: NF8757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8757_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 35355689 - 35356001
Alignment:
| Q |
19 |
atgattaactgtttatattaaaatataaggttgtgacttgtgagattataccagacaaattcaagcaaaaatatgttcgatataatgttggtagatttca |
118 |
Q |
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| T |
35355689 |
atgattaactgtttatattaaaatataaggttgtgacttgtgagattataccagacaaattcaagcaaaaatatgttcgatataatgttggtagattgca |
35355788 |
T |
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| Q |
119 |
ctcacttttagaagtcacatttcagcttttaaatgtaactaatcatgactatgtttagcaatttcattcgatttatatttcttctaggattttccctatc |
218 |
Q |
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| T |
35355789 |
ctcacttttagaagtcacatttcagcttttaaatgtaactaatcatgactatgtttagcaatttcattcgatttatatttcttctaggattttccctatc |
35355888 |
T |
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| Q |
219 |
aaccaagtaggacaattggatatttgtagcacatttcgtcttttgttctgtctctagcctaaacaaaggttaggattgatatttttggagaaatgttatt |
318 |
Q |
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| T |
35355889 |
aaccaagtaggacaattggatatttgtagcacatttcgtcttttgttctgtctctagcctaaacaaaggttaggaataatatttttggagaaatgttgtt |
35355988 |
T |
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| Q |
319 |
ttcacacgccttc |
331 |
Q |
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| T |
35355989 |
ttcacacgccttc |
35356001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 51 - 339
Target Start/End: Original strand, 35360014 - 35360299
Alignment:
| Q |
51 |
gtgacttgtgagattataccagacaaattcaagcaaaaatatgttcgatataatgttggtagatttcactcacttttagaagtcacatttcagcttttaa |
150 |
Q |
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| T |
35360014 |
gtgacttgggaggttgtaccagacaaattcaagcaaaa-tgtgtttgatacaaggtcggtaaattacactctcttttagaagtcacatttcagcctttag |
35360112 |
T |
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| Q |
151 |
atgtaactaatcatgactatgtttagcaatttcattcgatttatatttcttctaggattttccctatcaaccaagtaggacaattggatatttgtagcac |
250 |
Q |
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| T |
35360113 |
atgtaactaatcatggccatgtttggcaatttcattcaatttatattttttttaggattttccctatcaaccaagtaggacaattggatatttgtagcac |
35360212 |
T |
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| Q |
251 |
atttcgtcttttgttctgtctctagcctaaacaaaggttaggattgatatttttggagaaatgttattttcacacgccttcttctcact |
339 |
Q |
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||||||||| || ||||||||||||||||||| || | |||| ||| |||| ||||||||||||||||||||||||||| ||||| |
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| T |
35360213 |
atttcgtctctt-ctctgtctctagcctaaacacagcaaataattg-tatatttgaagaaatgttattttcacacgccttcttttcact |
35360299 |
T |
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