View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8757_low_2 (Length: 629)
Name: NF8757_low_2
Description: NF8757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8757_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 812877 - 813182
Alignment:
| Q |
17 |
aaaatgaaattgtaagtttgaaacccacaaatcattcatnnnnnnntcaaataaattgagatttgacaagatcaaaacacaacccaattaaacatgttga |
116 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
812877 |
aaaatcaaattgtaagtttgaaacccacaaatcattgataaaaaaatcaaataaattgagatttgacaagatgaaaacacaacccaattaaacatgttga |
812976 |
T |
|
| Q |
117 |
agatatgaaaaagaaatgaagttaaccctgttctactactccattgcataacataacatgattataaatttgtgccatnnnnnnntcaaactttttcttt |
216 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
812977 |
agatatgaaaaagaaatgaagctaaccctgttctactactccattgcgtcacataacatgattataaatttgtgtcataaaaaaatcaaactttttcttt |
813076 |
T |
|
| Q |
217 |
gacaaactacatataaaccttcaaattcagaataaatatttcttcgtcctgcatgtgtaaactgttcccattcatcatgttacaaaatgaagaaggtaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
813077 |
gacaaactacatataaaccttcaaattcagaataaatatttcttggtcctggatgtgtaaactgttcccattcatcatgttacaaaatgaagaaggtaat |
813176 |
T |
|
| Q |
317 |
cgaaat |
322 |
Q |
| |
|
|||||| |
|
|
| T |
813177 |
cgaaat |
813182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 424 - 464
Target Start/End: Original strand, 813234 - 813274
Alignment:
| Q |
424 |
tcctagtaattgacacatacatacatatttcaaactccaaa |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
813234 |
tcctagtaattgacacatacatacatatttcaaactccaaa |
813274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 495 - 527
Target Start/End: Complemental strand, 44084784 - 44084752
Alignment:
| Q |
495 |
gactccaaacaaactacaaacaacttccataat |
527 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
44084784 |
gactccaaacaaactacaaacaacttcaataat |
44084752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 464 - 608
Target Start/End: Complemental strand, 51105400 - 51105256
Alignment:
| Q |
464 |
actcgacaactaaacaacatgagtaatacatgactccaaacaaactacaaacaacttccataatttaaaaatcaaatctctttaaacaaagagaactttt |
563 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51105400 |
actcaacaactaaacaacatgagtaatatatgactccaaacaaactacaaacaacttccataatttaaaaatcaaatctctttaaacaaagagaactttt |
51105301 |
T |
|
| Q |
564 |
tcacttattcataagtaaaatgtggctcatgtgttttgcacagtg |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51105300 |
tcacttattcataagtaaaatgtggctcatgtgttttgcacagtg |
51105256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 495 - 527
Target Start/End: Original strand, 16442637 - 16442669
Alignment:
| Q |
495 |
gactccaaacaaactacaaacaacttccataat |
527 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
16442637 |
gactccaaacaaactacaaacaacttcaataat |
16442669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University