View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8757_low_20 (Length: 261)
Name: NF8757_low_20
Description: NF8757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8757_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 27102937 - 27103185
Alignment:
| Q |
1 |
tattccaacgttgccttcagtcccaacaacattgccacctttgccttcaatgccaacattgcctcaacctcaaggtaatgttcctccattgcctactatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27102937 |
tattccaacgttgccttcagtcccaacaacattgccacctttgccttcaatgccaacattgcctcaacctcaaggtaatgttcctccattgcctaccatc |
27103036 |
T |
|
| Q |
101 |
ccttctatgcctaagctcactatgccaccacttcctagcattcctaccaatccaacacttccatctctcaactttccaccatttccatccaattcacttc |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27103037 |
ccttcagtgcctaagctcactatgccaccacttcctagcattccaaccaatccaacacttccatctctcaactttccaccatttccatccaattcacttc |
27103136 |
T |
|
| Q |
201 |
ccaaccttccttcaatctcaaccattatctcctccatccctttcttctc |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27103137 |
ccaaccttccttcaatctcaaccattatctcctccatccctttcttctc |
27103185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 27096644 - 27096882
Alignment:
| Q |
11 |
ttgccttcagtcccaacaacattgccacctttgccttcaatgccaacattgcctcaacctcaaggtaatgttcctccattgcctactatcccttctatgc |
110 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27096644 |
ttgccctcaatcccaacaacattgccacctttgccttcaatgccaacattgcctcaacctcaaggtaatgttcctccattgcctactatcccttctatgc |
27096743 |
T |
|
| Q |
111 |
ctaagctcactatgccaccacttcctagcattcctaccaatccaacacttccatctctcaactttccaccatttccatccaattcacttcccaaccttcc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27096744 |
ctaagctcactatgccaccacttcctagcattcctaccaatccaacacttccatctctcaactttccaccatttccatccaattcacttcccaacattcc |
27096843 |
T |
|
| Q |
211 |
ttcaatctcaaccattatctcctccatccctttcttctc |
249 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
27096844 |
ttcaatctcaaccattatctcctccatccctttcttctc |
27096882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 27096607 - 27096661
Alignment:
| Q |
4 |
tccaacgttgccttcagtcccaacaacattgccacctttgccttcaatgccaaca |
58 |
Q |
| |
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|||||| ||||||||| | ||||||||||||||||||||||| ||||| |||||| |
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| T |
27096607 |
tccaacattgccttcaattccaacaacattgccacctttgccctcaatcccaaca |
27096661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 27102893 - 27102952
Alignment:
| Q |
5 |
ccaacgttgccttcagtcccaacaacattgccacctttgccttcaatgccaacattgcct |
64 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||||| |||||||| || ||||| |||||| |
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| T |
27102893 |
ccaacattgccttcaattccaacaacattgccaccattgccttctattccaacgttgcct |
27102952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 68 - 249
Target Start/End: Original strand, 37189722 - 37189909
Alignment:
| Q |
68 |
cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccaacacttccat |
164 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| || ||||||| |||||| |
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| T |
37189722 |
cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat |
37189821 |
T |
|
| Q |
165 |
ctctcaactttccaccatttccatc---caattcacttcccaaccttccttcaatctcaaccattatctcctccatccctttcttctc |
249 |
Q |
| |
|
|||||||| |||||||||| ||| | || ||||||||| ||||||||||||||| |||||| | || |||||||||| || ||||| |
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| T |
37189822 |
ctctcaacattccaccattgccagcagtcacttcacttccaaaccttccttcaatcccaaccactttcccctccatcccatttttctc |
37189909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 68 - 224
Target Start/End: Complemental strand, 37187815 - 37187653
Alignment:
| Q |
68 |
cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccaacacttccat |
164 |
Q |
| |
|
||||| || ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| || ||||||| |||||| |
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| T |
37187815 |
cctcagggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttcctagctttcctacaaattttccaacaattccat |
37187716 |
T |
|
| Q |
165 |
ctctcaactttccaccatttc---catccaattcacttcccaaccttccttcaatctcaacca |
224 |
Q |
| |
|
|||||||| |||||||||| | || ||| ||||||||||||| ||||||||||| |||||| |
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|
| T |
37187715 |
ctctcaacattccaccattgccagcagccacttcacttcccaacattccttcaatcccaacca |
37187653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 237
Target Start/End: Complemental strand, 37180132 - 37179957
Alignment:
| Q |
68 |
cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccaacacttccat |
164 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| || ||||||| |||||| |
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| T |
37180132 |
cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat |
37180033 |
T |
|
| Q |
165 |
ctctcaactttccaccatttccatc---caattcacttcccaaccttccttcaatctcaaccattatctcctccat |
237 |
Q |
| |
|
|||||||| |||||||||| ||| | || ||||||||| ||||||||||||||| |||||| | || ||||||| |
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| T |
37180032 |
ctctcaacattccaccattgccagcagtcacttcacttccaaaccttccttcaatcccaaccactttcccctccat |
37179957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 68 - 224
Target Start/End: Original strand, 37181605 - 37181767
Alignment:
| Q |
68 |
cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccaacacttccat |
164 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| || ||||||| |||||| |
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| T |
37181605 |
cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat |
37181704 |
T |
|
| Q |
165 |
ctctcaactttccaccatttccatc---caattcacttcccaaccttccttcaatctcaacca |
224 |
Q |
| |
|
|||||||| |||||||||| ||| | || ||||||||| ||||||||||||||| |||||| |
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|
| T |
37181705 |
ctctcaacattccaccattgccagcagtcacttcacttccaaaccttccttcaatcccaacca |
37181767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 38704189 - 38704157
Alignment:
| Q |
120 |
ctatgccaccacttcctagcattcctaccaatc |
152 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
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|
| T |
38704189 |
ctatgccaccacttcctagctttcctaccaatc |
38704157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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