View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8757_low_22 (Length: 254)
Name: NF8757_low_22
Description: NF8757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8757_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 39471815 - 39472051
Alignment:
| Q |
8 |
tttttgggtaaataaatgatactaattatgtacgctaattcatcctgatcctatataataaaacatgtatatcaaatgtcaaacacagtcacatagtcac |
107 |
Q |
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| T |
39471815 |
tttttgggtaaataaatgatactaattatgtacactaattcatcctaatcctatataataaaacatgtatatcaaatgtcaaacacagtcacatagtcac |
39471914 |
T |
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| Q |
108 |
tcacacacacttctaacacaaagaaaaagagagtcactcatactaagtgtatatccattttcctgtgctccaagatgaagaaagcagaagtggtgtttgt |
207 |
Q |
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| T |
39471915 |
tcacacacacttctaacacaaagaaaaagagagtcactcatactaagtgtataaccattttcctgtgctccaagatgaagaaagcagaagtggtgtttgt |
39472014 |
T |
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| Q |
208 |
ctcttttccggctgagggtcatatagtttcttctctc |
244 |
Q |
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| T |
39472015 |
cccttttccggctgagggtcatatagtttctgctctc |
39472051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 39454447 - 39454536
Alignment:
| Q |
1 |
gattctctttttgggtaaataaatgatactaattatgtacgctaattcatcctgatcctatataataaaacatgtatatcaaatgtcaaa |
90 |
Q |
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| T |
39454447 |
gattcttttttttggtaaataaatgatgctaattctgtacactaattcattttgttcctatgtaataaaacatgtacatcaaatatcaaa |
39454536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 39450921 - 39450987
Alignment:
| Q |
151 |
taagtgtatatcc-attttcctgtgctccaagatgaagaaagcagaagtggtgtttgtctcttttcc |
216 |
Q |
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| T |
39450921 |
taagtgtatatcctattatcctgtgcttcaagatgaagaaagcagaagtggtgtttatcccttttcc |
39450987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 39460189 - 39460237
Alignment:
| Q |
168 |
tcctgtgctccaagatgaagaaagcagaagtggtgtttgtctcttttcc |
216 |
Q |
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| T |
39460189 |
tcctgtgctccaagatgaagaaagcagaagttgtgtttatcccttttcc |
39460237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 39464764 - 39464694
Alignment:
| Q |
168 |
tcctgtgctccaagatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttct |
238 |
Q |
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| T |
39464764 |
tcctgtgcttcaaaatgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttct |
39464694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 39475453 - 39475493
Alignment:
| Q |
176 |
tccaagatgaagaaagcagaagtggtgtttgtctcttttcc |
216 |
Q |
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| T |
39475453 |
tccaagatgaagaaagcagaagtggtgtttatcccttttcc |
39475493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 39470984 - 39470917
Alignment:
| Q |
171 |
tgtgctccaagatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttct |
238 |
Q |
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| T |
39470984 |
tgtgctccaacatgaagaaagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttct |
39470917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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