View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8757_low_23 (Length: 252)
Name: NF8757_low_23
Description: NF8757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8757_low_23 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 49868075 - 49868293
Alignment:
| Q |
12 |
tgagatgaaaggcattctggaacaaattttggttccttccaatgtctgtcagtgaacttgcttactatattagcctgacaatgatagacacattgaattg |
111 |
Q |
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| T |
49868075 |
tgagatgaaaggcattctggaacaaattttggttccttccgatgtctgtcagtgaacttgcttactatatcagcctgacaatgatagacacattgaattg |
49868174 |
T |
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| Q |
112 |
tattaaaaataaataaatgtagaagtagaagcctagaaaacaaagggcaatggaacgttaaaaaacctcatgaatgataagagtttgaagtttagggaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49868175 |
tattaaaaataaataaatgtagaagtagaagcctagaaaacaaagggcaatggaacgttaaaaaaccttatgaatgataagagtttgaagtttagggaaa |
49868274 |
T |
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| Q |
212 |
ttttcaagcagttcaatca |
230 |
Q |
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||||||||||||||||||| |
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| T |
49868275 |
ttttcaagcagttcaatca |
49868293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 39559519 - 39559486
Alignment:
| Q |
179 |
tcatgaatgataagagtttgaagtttagggaaat |
212 |
Q |
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| T |
39559519 |
tcatgaatgataagagtttgaagtttggggaaat |
39559486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 50815232 - 50815184
Alignment:
| Q |
176 |
acctcatgaatgataagagtttgaagtttagggaaattttcaagcagtt |
224 |
Q |
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| T |
50815232 |
acctcacgaatgataagagtttgaagcttggggaaatttggaagcagtt |
50815184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 50860632 - 50860680
Alignment:
| Q |
176 |
acctcatgaatgataagagtttgaagtttagggaaattttcaagcagtt |
224 |
Q |
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| T |
50860632 |
acctcacgaatgataagagtttgaagcttggggaaatttggaagcagtt |
50860680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 2368 - 2420
Alignment:
| Q |
172 |
aaaaacctcatgaatgataagagtttgaagtttagggaaattttcaagcagtt |
224 |
Q |
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| T |
2368 |
aaaaacctcttcaatgataagagtttgaagtttggggaaattttcaagcagtt |
2420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 3914 - 3966
Alignment:
| Q |
172 |
aaaaacctcatgaatgataagagtttgaagtttagggaaattttcaagcagtt |
224 |
Q |
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||||||||| | ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3914 |
aaaaacctcttcaatgataagagtttgaagtttggggaaattttcaagcagtt |
3966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 6688359 - 6688317
Alignment:
| Q |
12 |
tgagatgaaaggcattctggaacaaattttggttccttccaat |
54 |
Q |
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| T |
6688359 |
tgagatgaaaggcattctggaacaatctttggttcctcccaat |
6688317 |
T |
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