View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8757_low_27 (Length: 227)
Name: NF8757_low_27
Description: NF8757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8757_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 16212185 - 16212058
Alignment:
| Q |
96 |
atgtatcagtttacatatcttaaaatctcatgaataaaagcagaacaagttcaaaattatatatttttcctttttggtaaacgtctcaatttgaatctca |
195 |
Q |
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| T |
16212185 |
atgtataagtttacatatcttaaaatctcatgaataaaagcagaacaagttcaaaattatttatttttcctttttgttaaacgtctcaatttgaatctca |
16212086 |
T |
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| Q |
196 |
cttgctttgcacacattctctgcttctc |
223 |
Q |
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||||||||||||||||||| |||||||| |
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| T |
16212085 |
cttgctttgcacacattctttgcttctc |
16212058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 16212215 - 16212183
Alignment:
| Q |
1 |
cctttgtcggactacaagcacatatttacaatg |
33 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
16212215 |
cctttgtcggactacaagcacatatttacaatg |
16212183 |
T |
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