View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8757_low_9 (Length: 392)
Name: NF8757_low_9
Description: NF8757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8757_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 41481397 - 41481761
Alignment:
| Q |
18 |
gcaagaaacaaaagctacgctaatagaaacaaggacatgaagattggggattacatnnnnnnngtgtttcaagattatgttgatagagattggttatgtg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41481397 |
gcaagaaacaaaagctacgctaatagaaacaaggacatgaagattggggattgcataaaaaaagtgtttcaagattatgttgatagagattggttatgtg |
41481496 |
T |
|
| Q |
118 |
aactaaatcataacatttgctactagaaacttatcaaatagaaaccaaaatcatgttgaagaa---tatgcgtccctctatattttactccacttgttag |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
41481497 |
aactaaatcataacatttgctactagaaacttatcaaatagaaaccaaaatcatgttgaagaagaatatgtgtccctctatattttactccacttgttag |
41481596 |
T |
|
| Q |
215 |
aattttttcaatgtattctacattttgttggcttatgtgattgttgttagtcactaaatttaatttgggcaacaattaaaaggtatttcgnnnnnnngcc |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||| ||| |
|
|
| T |
41481597 |
aattttttcaatgtattctacattttgttggcttatgtgattgttgttagtcaataaattcaatttgggcaacaattaaaaggtatatcgaaaaaaagcc |
41481696 |
T |
|
| Q |
315 |
aacaggatttattaaatttaagctgtagcgcaaatttatccaaaatggatatactattccactct |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41481697 |
aacaggatttattaaatttaagctgtagcgcaaatttatccaaaatggatatactattccactct |
41481761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University