View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8758_high_13 (Length: 394)
Name: NF8758_high_13
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 36549610 - 36549980
Alignment:
| Q |
18 |
aatatgaccccgtatttcgtcactaacacatcattccacaactcctcttccttacctaataacttctgcgaccatttagctaaaagacgaacattcacca |
117 |
Q |
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| T |
36549610 |
aatataaccccgtatttcgctactaacacttcattccacaactcctcttccttacctaataacttctgcgaccatttagctaaaagactgacattcacca |
36549709 |
T |
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| Q |
118 |
ctctaagatctctttcacctttaaaccactttcacttttatgtttccccacctcattccaactaactcaaccgatcttcctcctcttgtttagaccgccg |
217 |
Q |
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| T |
36549710 |
ctctaaaatctctctcacctttaaaccactttcacttttatgtttacacacctcattccaactaactcaaccaatcttcctcctcctgtttagaccgccg |
36549809 |
T |
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| Q |
218 |
cacaaaaactccctttgaattttaacaacctccttccataccttggtaattggtagccattttaagaaaagagat-nnnnnnnnnnnnnntcagaattgc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36549810 |
cacaaaaactccctttgaattttaacaacctccttccataccttggtaattggtagccattttaagaaaagagataaaaaaaaaaaaaaatcagaattgc |
36549909 |
T |
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| Q |
317 |
actaaccaccggattaataaacacaatcctccctgcccgaactaatattacttatctcccaagaataatct |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
36549910 |
actaaccaccggattaataaacacaatcctccctgcccgaactaatattacttatctctcacgaataatct |
36549980 |
T |
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