View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8758_high_18 (Length: 372)
Name: NF8758_high_18
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 9 - 353
Target Start/End: Complemental strand, 19586774 - 19586430
Alignment:
| Q |
9 |
tggtggtgcaagaacattttccagctgcggtggtggttgttgacatggtggtgaaataacgttttcttgcttcgacgatgaatgtggtggtgaaaccagt |
108 |
Q |
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| T |
19586774 |
tggtggtgcaagaacattttccagctgcggtggtggttgttgacatggtggtgaaataatgttttcttgcttcgacggtgaatgtggtggtgaatccagt |
19586675 |
T |
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| Q |
109 |
ggcgccagaacataagcaaaattaggatataattgaagaaatattaatcgttctggtgactcatgccatggtagaggttttcccttacgaccttctttga |
208 |
Q |
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| T |
19586674 |
ggcgccagaacataagcaaaattaggatataattgaagaaatattaatcgttctggtgactcatgccatggtcgaggttttcccttacgaccttcttcga |
19586575 |
T |
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| Q |
209 |
gttgtggaagtttggaagaatcttgataaatttcttgctgcggttgaagacatggtggaaaatctttaccaggaaatatatcttgaaaccatgactgtgc |
308 |
Q |
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| T |
19586574 |
gttgtggaagtttggaagaatcttgataattttcttgctgcggttgaagacatggtggaaaatctttaccaggaaatatatcttgaaaccatgactgtgc |
19586475 |
T |
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| Q |
309 |
ttgagaatcttctatttcatcaaatgacttgggttctgattcttg |
353 |
Q |
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| T |
19586474 |
ttgagaatcttctatttcatcaaatgacttgggttctgattcttg |
19586430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 276 - 353
Target Start/End: Original strand, 19579864 - 19579940
Alignment:
| Q |
276 |
accaggaaatatatcttgaaaccatgactgtgcttgagaatcttctatttcatcaaatgacttgggttctgattcttg |
353 |
Q |
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| T |
19579864 |
accaggaaatatttcttgaaaccatgactgtg-ttgagaatcttttatttcatcaaaagaattgggttctgattcttg |
19579940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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