View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8758_high_21 (Length: 340)
Name: NF8758_high_21
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_high_21 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 10 - 340
Target Start/End: Original strand, 4033284 - 4033614
Alignment:
| Q |
10 |
gagaagaaagcacactcttttgagggatttgttggcaagaatagttctaatagtatttgaaaattatttaattccttcaattattttcctacttgtatca |
109 |
Q |
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| T |
4033284 |
gagaagaaagcacactcttttgagggatttgttggcaagaatagttctaatagtatttgaaaattatttgattccttcaattattttcctacttgtatca |
4033383 |
T |
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| Q |
110 |
cagacacctttttgtgattaagacttatgatcaaacattgacaaaatagattgcttatgtaggaagtggtgttaaattagttaatatcaatggggtgata |
209 |
Q |
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| T |
4033384 |
tagacacctttttgtgattaagacttatgatcaaacattgacaaaatagattgcttatgtaggaagtggtgttaaattagttaatatcaatggggtgata |
4033483 |
T |
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| Q |
210 |
tcatagaaaactaaataaactaataaaggacataaagctaaaatttgtccgtatttgaatgactttgtctccttctttgttagttgattgaagtagactc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4033484 |
tcatagaaaactaaataaactaataaaggacataaagctcaaatttgtccgtatttgaatgactttgtctccttctttgttagttgattgaagtagactc |
4033583 |
T |
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| Q |
310 |
catagatagaatgtaccttagtttctttttt |
340 |
Q |
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| T |
4033584 |
catagatagaatataccttagtttctttttt |
4033614 |
T |
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