View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8758_high_23 (Length: 330)
Name: NF8758_high_23
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 13708147 - 13708477
Alignment:
| Q |
1 |
tttggaatgcgaaagaacagttttttgaagcttaatgagcaacttttttattctaaagtggtatcgtgccatggcccaattagaaagttcgtgaatggaa |
100 |
Q |
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| T |
13708147 |
tttggaatgcaaaagaacagttttttgaagcttaatgagcaactttcttattctaaagtggtatcgtgccatggcccaattagaaagttcgtgaatggaa |
13708246 |
T |
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| Q |
101 |
gaaaataaaattgacaattagagag----ttttccctctctaatttaagatcttttttagtagtgctaatcattccatggcaaaatggccagagacgact |
196 |
Q |
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| T |
13708247 |
gaaaaaaaaattgacaattagagagcttgttttccctctctaatttaagatcttttttagtagtgctagtcattccatggcaaaatggccagagacgact |
13708346 |
T |
|
| Q |
197 |
gataaactttttgaaatctactttaagagctttgcatgtatcgagtttgctaacaacaactcgaccaacaatgctatagaagatgtccataattttgagg |
296 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13708347 |
gataaacttttggaaatctactttaagagctttgcatgtatcgagtttgctaacaacaactcgaccaacaatgctatagaagatgtccataattttgagg |
13708446 |
T |
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| Q |
297 |
tggtttatacattatactcctttgtttattc |
327 |
Q |
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|||||||||||||||||||||||| |||||| |
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| T |
13708447 |
tggtttatacattatactcctttggttattc |
13708477 |
T |
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