View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8758_high_27 (Length: 298)

Name: NF8758_high_27
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8758_high_27
NF8758_high_27
[»] chr4 (4 HSPs)
chr4 (35-274)||(45341875-45342136)
chr4 (187-274)||(45363933-45364020)
chr4 (187-274)||(45375173-45375260)
chr4 (187-274)||(45382752-45382839)
[»] chr7 (1 HSPs)
chr7 (79-125)||(44602574-44602620)
[»] chr5 (2 HSPs)
chr5 (73-121)||(13861107-13861155)
chr5 (87-135)||(22554123-22554171)
[»] chr3 (2 HSPs)
chr3 (79-125)||(27531719-27531765)
chr3 (80-145)||(27538087-27538152)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 7e-89; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 35 - 274
Target Start/End: Original strand, 45341875 - 45342136
Alignment:
Q  35 atatgtttgtcaaaatttaatttatttatttttcaatggatagttatggaactaatctatttgttttttaataaattaattatgaataatgatgatcaca 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  45341875 atatgtttgtcaaaatttaatttatttatttttcaatggatagttatggaactaatctatttgttttttaataaattaattatgaataatcatcatcaca 45341974  T
Q  135 aatctaacaaaa-----------------tctacccaaatttcattatcggcttattaggccatctgttcatgattgctaactgtattaggtgcttgaat 217  Q
    |||||| ||| |                 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45341975 aatctaccaacaatatataaaattcaaagtccacccaaatttcattatcggcttattaggccatctgttcatgattgctaactgtattaggtgcttgaat 45342074  T
Q  218 tgattgcgccacataatcatttccggt-----cacaacagaagccaagcacgggagtataat 274  Q
    |||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||    
T  45342075 tgattgcgccacataatcatttccggtcacaacacaacagaagccaagcacgggagtataat 45342136  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 187 - 274
Target Start/End: Original strand, 45363933 - 45364020
Alignment:
Q  187 catgattgctaactgtattaggtgcttgaattgattgcgccacataatcatttccggtcacaacagaagccaagcacgggagtataat 274  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  45363933 catgattgctaactgtattaggtgcttgaattgattgcaccacataatcatttccaatcataacagaagccaagcacgggagtataat 45364020  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 187 - 274
Target Start/End: Original strand, 45375173 - 45375260
Alignment:
Q  187 catgattgctaactgtattaggtgcttgaattgattgcgccacataatcatttccggtcacaacagaagccaagcacgggagtataat 274  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  45375173 catgattgctaactgtattaggtgcttgaattgattgcaccacataatcatttccaatcataacagaagccaagcacgggagtataat 45375260  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 187 - 274
Target Start/End: Original strand, 45382752 - 45382839
Alignment:
Q  187 catgattgctaactgtattaggtgcttgaattgattgcgccacataatcatttccggtcacaacagaagccaagcacgggagtataat 274  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  45382752 catgattgctaactgtattaggtgcttgaattgattgcaccacataatcatttccaatcataacagaagccaagcacgggagtataat 45382839  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 44602574 - 44602620
Alignment:
Q  79 tatggaactaatctatttgttttttaataaattaattatgaataatg 125  Q
    |||||||||||| |||||||||||||| |||||||||| ||||||||    
T  44602574 tatggaactaatttatttgttttttaaaaaattaattacgaataatg 44602620  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 13861155 - 13861107
Alignment:
Q  73 gatagttatggaactaatctatttgttttttaataaattaattatgaat 121  Q
    |||| ||||| |||||||||||||||||||||| |||||||||| ||||    
T  13861155 gataattatgaaactaatctatttgttttttaaaaaattaattacgaat 13861107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 22554123 - 22554171
Alignment:
Q  87 taatctatttgttttttaataaattaattatgaataatgatgatcacaa 135  Q
    |||| |||||||||||||| |||||||||||| |||||| | |||||||    
T  22554123 taatttatttgttttttaaaaaattaattatggataatgctcatcacaa 22554171  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 27531719 - 27531765
Alignment:
Q  79 tatggaactaatctatttgttttttaataaattaattatgaataatg 125  Q
    |||||||||||| |||||||| ||||| |||||||||||| ||||||    
T  27531719 tatggaactaatttatttgttatttaacaaattaattatggataatg 27531765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 27538087 - 27538152
Alignment:
Q  80 atggaactaatctatttgttttttaataaattaattatgaataatgatgatcacaaatctaacaaa 145  Q
    ||||||||||| |||||||| |||||  | ||||||||| |||||| | ||||||||| |||||||    
T  27538087 atggaactaatttatttgttatttaactagttaattatggataatggttatcacaaatataacaaa 27538152  T

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