View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8758_high_31 (Length: 257)

Name: NF8758_high_31
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8758_high_31
NF8758_high_31
[»] chr5 (1 HSPs)
chr5 (1-252)||(2048099-2048351)
[»] chr7 (2 HSPs)
chr7 (85-186)||(40561686-40561788)
chr7 (86-166)||(45557440-45557521)
[»] chr2 (2 HSPs)
chr2 (114-186)||(4894114-4894187)
chr2 (115-186)||(1976822-1976894)
[»] scaffold2034 (1 HSPs)
scaffold2034 (7-63)||(679-734)
[»] chr6 (1 HSPs)
chr6 (92-184)||(882743-882836)
[»] scaffold0361 (1 HSPs)
scaffold0361 (115-186)||(14072-14144)
[»] chr8 (1 HSPs)
chr8 (115-182)||(4950542-4950610)
[»] chr4 (2 HSPs)
chr4 (189-237)||(2206763-2206811)
chr4 (186-234)||(18597035-18597083)


Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 2048099 - 2048351
Alignment:
Q  1 ttctcgataacgtatcatttcatccttcctttttctcttataaccgctttccatcaatttgctcnnnnnnnnnnnnnnnnnnnn-gttgatattgaatga 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     |||||||||||||||    
T  2048099 ttctcgataacgtatcatttcatccttcctttttctcttataaccgctttccatcaatttgctcttttttttttattttaattttgttgatattgaatga 2048198  T
Q  100 attgattgtgatttaaattgagttgaaagtaaagtgattatgtgtggatatattcattaaaaagtgatttcaataataaatttgagttatagaatcaaaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2048199 attgattgtgatttaaattgagttgaaagtaaagtgattatgtgtggatatattcatgaaaaagtgatttcaataataaatttgagttatagaatcaaaa 2048298  T
Q  200 gttccaatttatagcttaaagttaggatcaattctacttgtgaaccaccaaac 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2048299 gttccaatttatagcttaaagttaggatcaattctacttgtgaacaaccaaac 2048351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 40561686 - 40561788
Alignment:
Q  85 gttgatattgaatgaattgattgtgatttaaattgagttgaaagtaaagtga-ttatgtgtggatatattcattaaaaagtgatttcaataataaatttg 183  Q
    |||||| |||| |||||||||| |  |  ||||||||||||||||||||||| |||||| |||||| ||||||  |||||||| || || |||| |||||    
T  40561686 gttgattttgagtgaattgattctagtaaaaattgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgagttgaacaatatatttg 40561785  T
Q  184 agt 186  Q
    |||    
T  40561786 agt 40561788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 45557521 - 45557440
Alignment:
Q  86 ttgatattgaatgaattgattgtgatttaaattgagttgaaagtaaagtga-ttatgtgtggatatattcattaaaaagtga 166  Q
    ||||| ||||||||||||||| ||| | ||| ||||||||| ||||||||| || ||| |||||| ||||||  ||||||||    
T  45557521 ttgattttgaatgaattgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtga 45557440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 4894114 - 4894187
Alignment:
Q  114 aaattgagttgaaagtaaagtgatt-atgtgtggatatattcattaaaaagtgatttcaataataaatttgagt 186  Q
    ||||| ||||||| ||||||||||| |||| | |||| ||||||| |||||||| || ||||||||||||||||    
T  4894114 aaattaagttgaaggtaaagtgatttatgtttagatacattcatttaaaagtgacttgaataataaatttgagt 4894187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 1976822 - 1976894
Alignment:
Q  115 aattgagttgaaagtaaagtga-ttatgtgtggatatattcattaaaaagtgatttcaataataaatttgagt 186  Q
    |||||||||||| |||||| || |||||| |||||| ||||||  |||||||| ||||| |||||||||||||    
T  1976822 aattgagttgaaggtaaagcgacttatgtttggatacattcatgtaaaagtgagttcaacaataaatttgagt 1976894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold2034
Description:

Target: scaffold2034; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 679 - 734
Alignment:
Q  7 ataacgtatcatttcatccttcctttttctcttataaccgctttccatcaatttgct 63  Q
    ||||||||| |||||||| |||||||| ||||||||| |||||||||| ||||||||    
T  679 ataacgtattatttcatcattcctttt-ctcttataatcgctttccatgaatttgct 734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 882836 - 882743
Alignment:
Q  92 ttgaatgaattgattgtgatttaaattgagttgaaagtaaagtgatt-atgtgtggatatattcattaaaaagtgatttcaataataaatttga 184  Q
    |||| |||||||||| |  || ||||||||||||| ||||| ||||| |||| |||||| ||||||  |||||||| || || |||||||||||    
T  882836 ttgagtgaattgattctagttaaaattgagttgaaggtaaaatgatttatgtttggatacattcatgcaaaagtgagttaaacaataaatttga 882743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 14072 - 14144
Alignment:
Q  115 aattgagttgaaagtaaagtga-ttatgtgtggatatattcattaaaaagtgatttcaataataaatttgagt 186  Q
    |||||||||||| ||||||||| |||||| |||||| ||||||   ||||||| || || |||||||||||||    
T  14072 aattgagttgaaggtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgagt 14144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 4950610 - 4950542
Alignment:
Q  115 aattgagttgaaagtaaagtga-ttatgtgtggatatattcattaaaaagtgatttcaataataaattt 182  Q
    |||||||||||| ||||||||| |||||| |||||||||| || | ||||||| || || |||||||||    
T  4950610 aattgagttgaaggtaaagtgatttatgtttggatatatttatgagaaagtgagttgaaaaataaattt 4950542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 2206763 - 2206811
Alignment:
Q  189 tagaatcaaaagttccaatttatagcttaaagttaggatcaattctact 237  Q
    |||||||||||| |||||||| |||||  ||||||| ||||||||||||    
T  2206763 tagaatcaaaagctccaatttttagctgcaagttagaatcaattctact 2206811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 18597083 - 18597035
Alignment:
Q  186 ttatagaatcaaaagttccaatttatagcttaaagttaggatcaattct 234  Q
    ||||||||||||||| | ||| ||||||||| ||||||| |||||||||    
T  18597083 ttatagaatcaaaaggttcaaattatagcttcaagttagaatcaattct 18597035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University