View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8758_high_37 (Length: 242)
Name: NF8758_high_37
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_high_37 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 33317742 - 33317965
Alignment:
| Q |
1 |
ccttgcagtcattcaaatgagaaattggtgagtataatgtcattccttctttctccttactaatctctatgttgtnnnnnnnttcattcttcaatgtgtt |
100 |
Q |
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| T |
33317742 |
ccttgcattcattcaaatgagaaattggtgagtataatgtcattccttctttctccttactaatctctatgttgtaaaaaaattcattcttcaatgtgtc |
33317841 |
T |
|
| Q |
101 |
atttttcagtgttcgtggctattgagaaaaatttaataggcctaacctgaggatgtaaagaagaacaccatctgcagaggctattgcttgaagactctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33317842 |
atttttcagtgttcgtggctattgagaaaaatttaataggcctaacctgaggatgtaaagaagaacaccatctgcagaggctattgcttgaagactctcc |
33317941 |
T |
|
| Q |
201 |
tacttgatgagacattcttgttcc |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
33317942 |
tacttgatgagacattcttgttcc |
33317965 |
T |
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