View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8758_high_39 (Length: 240)
Name: NF8758_high_39
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 43875652 - 43875874
Alignment:
| Q |
1 |
tcggataggatcgcattgaggggcaaagctcttcctaatccgtcttagtttgttgcacaatatccaacaaaaaatcggtgaaaaaaggctcaaaagatgg |
100 |
Q |
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| T |
43875652 |
tcggataggatcgcattgaggggcaaagctcttcctaatccgtcttagtttgttgcacaacatccaacaaaaaatcggtgaaaaaaggctcaaaagatgg |
43875751 |
T |
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| Q |
101 |
caatttagcatacccaggaaagtaattgatatcaatcacaagataccttctgggatttttaccatctctaatcacatcaacattgaaaagattaagtccc |
200 |
Q |
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| T |
43875752 |
caatttagcatacccaggaaagtaattgatatcaatcacaagataccttctgggatttttaccatctctaatcacatcaacattgaaaagattaagtccc |
43875851 |
T |
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| Q |
201 |
aatctttcccttaatccactagc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
43875852 |
aatctttcccttaatccactagc |
43875874 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 27736433 - 27736481
Alignment:
| Q |
99 |
ggcaatttagcatacccaggaaagtaattgatatcaatcacaagatacc |
147 |
Q |
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|||| |||||||||||| ||||||||||| |||||||| | |||||||| |
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| T |
27736433 |
ggcattttagcataccctggaaagtaattaatatcaataataagatacc |
27736481 |
T |
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