View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8758_high_8 (Length: 471)
Name: NF8758_high_8
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 14 - 453
Target Start/End: Complemental strand, 36636286 - 36635846
Alignment:
| Q |
14 |
tgaaatgaaggttaatattgattagtatttttacaacaccataaaattccatttttagtaa-taatttgttttattcattaatcccctttcattcaaact |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36636286 |
tgaattgaaggttaatattgattagtatttttacaacaccataaaattccatttttagtaaataatttgttttattcattaatcccctttcattcaaact |
36636187 |
T |
|
| Q |
113 |
actaccatttatttctacatctttctctcctannnnnnnngttcatctccgttcttctctcgttttcttcactgccacgcaatggcaagaaccgcctctc |
212 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36636186 |
actaccatttatttctacatctttctctcctattttttttcttcatctccgttcttctctcgttttcttcactgccacgcaatggcaagaaccgcctctc |
36636087 |
T |
|
| Q |
213 |
aatcatctcaatctgcatcttccggtgccacgacacgaccaggtgtcatggcaccacgcggctccgctgccgctacagccggtatgcgtcgtcgccgccc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36636086 |
aatcatctcaatctgcatcttccggtgccacgacacgaccaggtgtcatggcaccacgcggctccgctgccgctacagccggtatgcgtcgtcgccgtcc |
36635987 |
T |
|
| Q |
313 |
aacaggtggaaacactaccagctccacctctgccgcaggaagctccagcggagggaacaacatgctgcgattctacactgacgatgcacctggtttgaag |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36635986 |
aacaggtggaaacactaccagctccacctctgccgcaggaagctccagcggagggaacaacatgctgcgattctacaccgacgatgcacctggtttgaag |
36635887 |
T |
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| Q |
413 |
atttctccgacggtggttctcgtgatgagtctcggcttcat |
453 |
Q |
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| T |
36635886 |
atttctccgacggtggttctcgtgatgagtctcggcttcat |
36635846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 453
Target Start/End: Original strand, 39998468 - 39998562
Alignment:
| Q |
359 |
agcggagggaacaacatgctgcgattctacactgacgatgcacctggtttgaagatttctccgacggtggttctcgtgatgagtctcggcttcat |
453 |
Q |
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|||||||| | |||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| ||| | || ||||||||| ||||||| |
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| T |
39998468 |
agcggaggaagcaacatgctgagattctacactgatgatgcacctggtttgaagatttctcctacggttgttttggttatgagtctctgcttcat |
39998562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 39998381 - 39998424
Alignment:
| Q |
266 |
ccacgcggctccgctgccgctacagccggtatgcgtcgtcgccg |
309 |
Q |
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| T |
39998381 |
ccacgcggctccgctgccgccactgccggcatgcgtcgtcgccg |
39998424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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