View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8758_high_9 (Length: 468)
Name: NF8758_high_9
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 89 - 458
Target Start/End: Complemental strand, 45243287 - 45242910
Alignment:
| Q |
89 |
tatctgtaagttctagaagataaagaataagagagatagggataaaca--------tcatatattatggtgtatgtattttgatgtcgaaataacataac |
180 |
Q |
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| T |
45243287 |
tatctgtaagttctagaagataaagaataagagagatagggataaacacatctgtatcatattttatggtgtatgtattttgatgtcgaaataacataac |
45243188 |
T |
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| Q |
181 |
tgcattttattagaggtcaaatcgaatcaactttttgtatcgtttgtttatgtacatatttttacatgattttgaaaatgactgcatgttgaatttcgaa |
280 |
Q |
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| T |
45243187 |
tgcattttattagaggtcaaatcgaatcaactttttgtgtcgtttgtttatgtacatatttttacatgattttgaaaatgactgcatgttgaatttcgaa |
45243088 |
T |
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| Q |
281 |
agaaacaataaagagtgtatgttttgtgtgtgacgaagaaaagcattaagctagacaacaattcattttcatataaatttagttaaagaaagaatctcga |
380 |
Q |
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| T |
45243087 |
agaaacaataaagagtgtatgttgtgtgtgtgacgaagaaaagcattaagctagacaacaattcattttcatataaatttagttaaagaaagaacctcga |
45242988 |
T |
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| Q |
381 |
tatgaattgannnnnnnncctcttcgttattttatatatcctcactcctaaatcatcattttgacgagcttatctctg |
458 |
Q |
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| T |
45242987 |
tatgaattgattttttttcctcttcgttattttatatatcctcactcctaaatcatcattttgacgagcttatttctg |
45242910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 45243356 - 45243309
Alignment:
| Q |
22 |
tggacatcaaaattttgatatcaggtacagtatccattggtttttgcatg |
71 |
Q |
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| T |
45243356 |
tggacatcaaaattttgatatcaggt--tgtatccattggtttttgcatg |
45243309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 8576845 - 8576934
Alignment:
| Q |
145 |
tatggtgtatgtattttgatgtcgaaataacataactgcattttattagaggtcaaatcgaatcaacttt-ttgtatcgtttgtttatgt |
233 |
Q |
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| T |
8576845 |
tatggtgtatgtattttgatgttgaaataacacaactgcattttgttagaggtcaaattgaatcacctttcttgtgtagtttgtttatgt |
8576934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 390
Target Start/End: Original strand, 8580177 - 8580242
Alignment:
| Q |
325 |
attaagctagacaacaattcattttcatataaatttagttaaagaaagaatctcgatatgaattga |
390 |
Q |
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| T |
8580177 |
attaagttagacaatgatccattttcttataaattaggttaaagaaagaatatcaatatgaattga |
8580242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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