View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8758_low_1 (Length: 773)
Name: NF8758_low_1
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 638; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 18 - 736
Target Start/End: Original strand, 39521653 - 39522371
Alignment:
| Q |
18 |
gttttcagcgttgaaattatgtaacagaatgaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39521653 |
gttttcagcgttgaaattatgtaacagaaggaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgg |
39521752 |
T |
|
| Q |
118 |
aaacgtaccatgtaagtgttgtttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtg |
217 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39521753 |
aaacgtaccatgtaagtgttgcttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtg |
39521852 |
T |
|
| Q |
218 |
attgacttgttacgttggagttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataatggttgttattttcatccacgtcgac |
317 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
39521853 |
attgacttgttactttggagttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataaaggttgttattttcattcacgtcgat |
39521952 |
T |
|
| Q |
318 |
atctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaattgaagnnnnnnngcaagtagaaagata |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
39521953 |
atctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaattgaagaaaaaaagcaaggagaaagata |
39522052 |
T |
|
| Q |
418 |
gagcgttgaattgtgtggaagtgaaaggttgacatagtgagagaggaaaattgtgtttgtttgatgannnnnnnnaagttatgaaattgatgattgctat |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39522053 |
gagcgttgaattgtgtggaagtgaaaggttgacatggtgagagaggaaaattgtgtttgtttgatgattttttttaagttatgaaattgatgattgctat |
39522152 |
T |
|
| Q |
518 |
tcatagaagttggtagaagtagggagtggagaagagaaggggaaccaatgatgaagaagacatagataagaggaagactttagctgtggactggttaagt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39522153 |
tcatagaagttggtagaagtagggagtggagaagagaaggggaaccaatgatgaagaagacatagataagaggaagactttagctgtggactggttaagt |
39522252 |
T |
|
| Q |
618 |
cgtcacctttgaattttcttatttcttgtttgtttctctctttaattttaaatataaataaaatatttgaaagttgatttatcacctaccaataccatga |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39522253 |
cgtcacctttgaattttcttatttcttgtttgtttctctctttaattttaaatataaataaaatatttgaaagttgatttatcacctaccaataccatga |
39522352 |
T |
|
| Q |
718 |
ctatagtataacacactct |
736 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
39522353 |
ctatagtataacacactct |
39522371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 39544446 - 39544820
Alignment:
| Q |
18 |
gttttcagcgttgaaattatgtaacagaatgaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatga |
117 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39544446 |
gttttcagagttgaaattttgtaacagaatgaaaccagggactgaaacattgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgg |
39544545 |
T |
|
| Q |
118 |
aaacgtaccatgtaagtgttgtttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtg |
217 |
Q |
| |
|
|||| ||||||||| ||||||||||| | ||| |||||||||||||| | |||| |||| || ||||||||||||| |||||||||| ||||||||| |
|
|
| T |
39544546 |
aaacataccatgtaggtgttgtttggtatggtagaaaattcataggaagactcggaatggaatatccttgctgtttggtagagaggtgaaaacactggtg |
39544645 |
T |
|
| Q |
218 |
attgacttgttacgttggagttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataatggttgttattttcatccacgtcgac |
317 |
Q |
| |
|
||||||||||||| |||||| |||| ||||| | |||| ||||||| | |||||||||||||||||||| ||||||||||||||| |||||| | |
|
|
| T |
39544646 |
attgacttgttactttggag---ctttttctgaaacttgtttttgggtaagtagggtttgattcaccaatataaaggttgttattttcattcacgtcaat |
39544742 |
T |
|
| Q |
318 |
atctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaattgaag |
395 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
39544743 |
atctgatccgcaattgatgaagtatgtgtcttggtgatcgtatccgagtgagggaaattgtaatgatgcgaattgaag |
39544820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 39576298 - 39576675
Alignment:
| Q |
18 |
gttttcagcgttgaaattatgtaacagaatgaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||| | |||||||||||| |||||| ||||||||||||||||||||||||||| | |
|
|
| T |
39576298 |
gttttcagcgttgaaattatgtaacagaaggaaaccaggaacggaaatgttgaattttgcagtggaaagtttagttggtgaagagaatgaaaagaaacgg |
39576397 |
T |
|
| Q |
118 |
aaacgtaccatgtaagtgttgtttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtg |
217 |
Q |
| |
|
||||||||||| |||||||||||||| | ||| ||||| ||||| || | ||| ||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
39576398 |
aaacgtaccatataagtgttgtttggtatggtagaaaattcgtaggaggattcagaatggaaaattcttgctgtttggtaaagaggtgaagacactgatg |
39576497 |
T |
|
| Q |
218 |
attgacttgttacgttggagttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataatggttgttattttcatccacgtcgac |
317 |
Q |
| |
|
|| || | ||| | |||| | |||| ||||||| ||||||| |||||||||||||||||||||||||||||| | || |||||||||| |||||||| |
|
|
| T |
39576498 |
atggattggtttctatggaacttctttggctgaatgattttttagggtaagcatggtttgattcaccaatataaagattcttattttcattcacgtcgat |
39576597 |
T |
|
| Q |
318 |
atctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaattgaag |
395 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||| |||| ||||||||||||||| |
|
|
| T |
39576598 |
atctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagtgtagtgatgagaattgaag |
39576675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 39511407 - 39511617
Alignment:
| Q |
18 |
gttttcagcgttgaaattatgtaacagaatgaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatga |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||| ||||||||||| |||||| |
|
|
| T |
39511407 |
gttttcagcgttgaaattttgtaacagaatgaaaccaggaactgaaacagtgaattttgcagtggaaagtttagttggtgtagagaatgaaaggaaatgg |
39511506 |
T |
|
| Q |
118 |
aaacgtaccatgtaagtgttgtttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtg |
217 |
Q |
| |
|
||||||||||| || ||||||||||| | |||||||||||| || |||| | |||| ||||||| ||||| ||||||| ||||| ||||| |||| || |
|
|
| T |
39511507 |
aaacgtaccatataggtgttgtttgggatggttttgaattcgtaccaagattcggaacggaaaatccttgcagtttggtagagagatgaaggaactgatg |
39511606 |
T |
|
| Q |
218 |
attgacttgtt |
228 |
Q |
| |
|
||||| ||||| |
|
|
| T |
39511607 |
attgatttgtt |
39511617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 30 - 224
Target Start/End: Original strand, 39525162 - 39525356
Alignment:
| Q |
30 |
gaaattatgtaacagaatgaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatg |
129 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39525162 |
gaaattttgtaacagaatgaaaccagggactgaaacggtgaattttgcagtggaaaggttaagtggtgaagagaatgaaaagaaatggaaacgtaccatg |
39525261 |
T |
|
| Q |
130 |
taagtgttgtttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtgattgact |
224 |
Q |
| |
|
|| ||||||||||| ||||||||||| || || |||| | |||| | || || ||||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
39525262 |
taggtgttgtttggtacggttttgaactcgtataaagattcggaatgaaatatccttgctgtttggtagagaggtgaaggcactgatgattgact |
39525356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 31 - 395
Target Start/End: Original strand, 39580840 - 39581216
Alignment:
| Q |
31 |
aaattatgtaacagaatgaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatgaaaacgtaccatgt |
130 |
Q |
| |
|
||||| ||||||||| |||||| |||| |||||| |||||||||||| |||||| ||||||||| |||||||| ||||||||| ||||||||||||| |
|
|
| T |
39580840 |
aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgt |
39580939 |
T |
|
| Q |
131 |
aagtgttgtttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaa---------gaca---ctggtga |
218 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| |||| |||||| |||| || |||||||||||| |||||||||| || | || ||| |
|
|
| T |
39580940 |
aagtgttgtttggtacggttttgaattcgtagaaagatttggaagggaatataattgctgtttggtagagaggtgaaagtggtgttgatagtgatgatga |
39581039 |
T |
|
| Q |
219 |
ttgacttgttacgttggagttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataatggttgttattttcatccacgtcgaca |
318 |
Q |
| |
|
|||||||||||| |||||| |||| |||||| | | ||||||| |||| | |||||||||||||||||||| ||||||| ||||| || || | | |
|
|
| T |
39581040 |
ttgacttgttactttggag---cttttgctgaaaactgttttcggataagtagggtttgattcaccaatataaacgttgttactttcagtaacatcaaaa |
39581136 |
T |
|
| Q |
319 |
tctgatccacaattgatgaagtatgtgtcttgaggatcgt---atccgagtgaggggaattgtaatgatgagaattgaag |
395 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| |||| | ||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
39581137 |
tctgatccgcaattgatgaagtatgtgtgttggggattatataatccgagcgaggaaaattgtaatgatgagaattgaag |
39581216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 505 - 656
Target Start/End: Original strand, 39581306 - 39581459
Alignment:
| Q |
505 |
tgatgattgctattcatagaagttggtagaagtagggagtgg-agaagagaagggga--accaatgatgaagaagacatagataagaggaagactttagc |
601 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||| ||||||| | |||||| ||||||| || | |
|
|
| T |
39581306 |
tgatgactgctattcatagaagttagtagaagtagggagtgggagaagagaagggggggaccaatga---agaagacttgcataagaagaagactctatc |
39581402 |
T |
|
| Q |
602 |
tgtggactgg--ttaagtcgtcacctttgaattttcttatttcttgtttgtttctct |
656 |
Q |
| |
|
||||||||| |||||| ||| |||||||||||||| || ||| ||||||||||| |
|
|
| T |
39581403 |
tgtggactgtgattaagttgtccgctttgaattttctttttccttatttgtttctct |
39581459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 318 - 394
Target Start/End: Original strand, 39525453 - 39525529
Alignment:
| Q |
318 |
atctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaattgaa |
394 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| |||||||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
39525453 |
atctgatccacaactgatgaagtatatgtcttgttcatcgtatccgagcgaggggaagtataatgatgagaattgaa |
39525529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 318 - 395
Target Start/End: Original strand, 39581850 - 39581927
Alignment:
| Q |
318 |
atctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaattgaag |
395 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||| ||||||||| ||||||| ||| |||||||||||||||||||| |
|
|
| T |
39581850 |
atcttatccacaactgatgaagtatatgtcttggtcatcgtatccaagtgaggcgaactgtaatgatgagaattgaag |
39581927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 581 - 654
Target Start/End: Original strand, 39571647 - 39571722
Alignment:
| Q |
581 |
agataagaggaagactttagctgtggactg--gttaagtcgtcacctttgaattttcttatttcttgtttgtttct |
654 |
Q |
| |
|
||||||||||||||||| ||| ||||| || |||||||||||| ||||| |||||||| || ||||||||||||| |
|
|
| T |
39571647 |
agataagaggaagacttaagccgtggagtgtggttaagtcgtcagctttggattttcttcttccttgtttgtttct |
39571722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 3331633 - 3331509
Alignment:
| Q |
18 |
gttttcagcgttgaaattatgtaacagaatgaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatga |
117 |
Q |
| |
|
||||| ||||| ||||||| |||||||| |||||| | ||| |||| | ||||||| |||| |||||||||| |||||||||||||||||| |||||| |
|
|
| T |
3331633 |
gtttttagcgtcgaaattagttaacagaaggaaaccggaaacagaaatgttgaattt-gcagtggaaaggttaattggtgaagagaatgaaaggaaatgg |
3331535 |
T |
|
| Q |
118 |
aaacgtaccatgtaagtgttgtttgg |
143 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
3331534 |
aaacgtaccatgtaggtgttgtttgg |
3331509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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