View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8758_low_13 (Length: 409)
Name: NF8758_low_13
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 162 - 395
Target Start/End: Original strand, 131217 - 131453
Alignment:
| Q |
162 |
aagcagaagcagcagcagcaggtattgctggattgtgataattagagtgtggttgttgctgtgggtagtaggaaggaacctgattatataacgggactgc |
261 |
Q |
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| T |
131217 |
aagcagaagcagcagcagcaggtattgctggattgtgataattagagtgtggttgttgctgtgggtagtaggaaggaacctgattatataacgggactgc |
131316 |
T |
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| Q |
262 |
cggcggtgttgccatgtaaggaatatggcttgaggagcct---ggtttctgcaatatattacaatcacaaacacacttattaatcatcaattccaatcct |
358 |
Q |
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| T |
131317 |
cggcggtgttgccatgtaaggaatatggcttgaggagcctgcaggtttctgcaatatattaccatcacaaacacacttattaatcatcaattccaatcct |
131416 |
T |
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| Q |
359 |
tatatgtatgtaaataaatataaatactgatgaaaat |
395 |
Q |
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| T |
131417 |
tatatgtatgtaaataaatataaatactgatgaaaat |
131453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 131056 - 131149
Alignment:
| Q |
1 |
cttaccagcgtttggaggataacctggaggtggagggtatgaaggcggtggataggctgaagatggaggataagagtggggaggagggtatggc |
94 |
Q |
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| T |
131056 |
cttaccagcgtttggaggataacctgtaggtggagggtatgaaggcggtggataggctgaagatggaggataagagtggggaggagggtatggc |
131149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 177 - 355
Target Start/End: Complemental strand, 161720 - 161543
Alignment:
| Q |
177 |
cagcaggtattgctggattgtgataattagagtgtggttgttgctgtgggtagtaggaaggaacctgattatataacgggactgccggcggtg---ttgc |
273 |
Q |
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| T |
161720 |
cagcaggtgttgttggatggtgataattagagtgtggttgttg---tgggtagtaggaaggaacgtgattatatgatgggactgccggcgttggcattgc |
161624 |
T |
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| Q |
274 |
catgtaaggaatatggcttgaggagcctggtttctgcaatatattacaatcacaaacacacttattaatcatcaattccaat |
355 |
Q |
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| T |
161623 |
tgtatagggagtatggcttgaggagcctggtttctgcaatatattagcatcccaaacacactcattaa-gatcaattccaat |
161543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 161992 - 161903
Alignment:
| Q |
1 |
cttaccagcgtttggaggataacctggaggtggagggtatgaaggcggtggataggctgaagatggaggataagagtggggaggagggta |
90 |
Q |
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| T |
161992 |
cttaccagtgtttggaggataacctgcaggtggagggtatgatggtggtggataagctgaagatggcggataagagtggggaggagggta |
161903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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