View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8758_low_14 (Length: 401)
Name: NF8758_low_14
Description: NF8758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8758_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 25 - 383
Target Start/End: Original strand, 7070617 - 7070980
Alignment:
| Q |
25 |
ggcacgtacgaggttatttggatgagcaaaacaaacaagttatgtt-gtgtgggagaaatagggatttggtttctgtgaagacact---tagtcagttag |
120 |
Q |
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| T |
7070617 |
ggcacgtacgaggttatttggatgagcaaaacaaacaagttatgtttgtgtgggagaaatagggatttggtttctgtgaagacactaagtagtcagttag |
7070716 |
T |
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| Q |
121 |
gcacatccgaacctttcaaacttgttggataatccaaaattttaagttagaatttaagannnnnnnnnn-ggtggaaagaatttaagatttatgaattac |
219 |
Q |
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| T |
7070717 |
gcacatccgaacctttcaaacttgttggataatccaaaattttaagttagaatttaagatttttttttttggtggaaagaatttaagatttatgaattac |
7070816 |
T |
|
| Q |
220 |
ttaaatatgaacttaaaatctaaaccgttcaattataatcaagcaatttaaatgtgttgagtgttgaccgcatgtcgtcagactatactaaatcttcttc |
319 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | |
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| T |
7070817 |
ttaaatatgaacttaaaatttaaaccgttcaattaaaatcaagcaatttaaatgtgttgagtgttaactgcatgtcgtcagactatactaaatcttctgc |
7070916 |
T |
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| Q |
320 |
gtaactttaacttagttggtacagacaatacataatatatgaaagatgaggggttcaaacatcg |
383 |
Q |
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| T |
7070917 |
gtgactttaacttagttgatacagacaatgcataatatatgtaaggtgcgtggttcaaaaatcg |
7070980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 385
Target Start/End: Original strand, 3389169 - 3389227
Alignment:
| Q |
327 |
taacttagttggtacagacaatacataatatatgaaagatgaggggttcaaacatcggc |
385 |
Q |
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| T |
3389169 |
taactcagttggtatggacaatgcataatatatgcaagatctggggttcaaacatcggc |
3389227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 379
Target Start/End: Complemental strand, 32862138 - 32862084
Alignment:
| Q |
325 |
tttaacttagttggtacagacaatacataatatatgaaagatgaggggttcaaac |
379 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||| || |||||||| |
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| T |
32862138 |
tttaacttagttggtatagacaatacataatatatgcaagatctggcgttcaaac |
32862084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 366
Target Start/End: Complemental strand, 10029881 - 10029840
Alignment:
| Q |
325 |
tttaacttagttggtacagacaatacataatatatgaaagat |
366 |
Q |
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| T |
10029881 |
tttaacttaattggtaaagacaatacataatatatgcaagat |
10029840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 24872983 - 24872936
Alignment:
| Q |
315 |
tcttcgtaactttaacttagttggtacagacaatacataatatatgaa |
362 |
Q |
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| T |
24872983 |
tcttcgtaaacttaacttagttgatacagacattacataatatatgaa |
24872936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 360
Target Start/End: Complemental strand, 1864282 - 1864240
Alignment:
| Q |
318 |
tcgtaactttaacttagttggtacagacaatacataatatatg |
360 |
Q |
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| T |
1864282 |
tcgtaagtttaacttagttggtagagacaatgcataatatatg |
1864240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 360
Target Start/End: Original strand, 29506833 - 29506867
Alignment:
| Q |
326 |
ttaacttagttggtacagacaatacataatatatg |
360 |
Q |
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||||||||||||||| ||||||||||||||||||| |
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| T |
29506833 |
ttaacttagttggtatagacaatacataatatatg |
29506867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 33634503 - 33634563
Alignment:
| Q |
325 |
tttaacttagttggtacagacaatacataatatatgaaagatgaggggttcaaacatcggc |
385 |
Q |
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|||||||||||||||| | | |||| |||||||||| ||| | ||||||||||||||||| |
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| T |
33634503 |
tttaacttagttggtataaataatatataatatatgtaaggttcggggttcaaacatcggc |
33634563 |
T |
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